Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0258
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     31   1.1  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         29   3.4  
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           29   3.4  

>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 6   ASYNINSMPTFVFVKNGKKLDEFSGAN 86
           A   + +MPTF F KN  K+DE  GA+
Sbjct: 74  AKQGVTAMPTFQFFKNKVKVDEVRGAD 100


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 287 FFAFQRXQTQKLISSNSLQTLKTFFIHLLKT 195
           F   +R +  KL+SSNS+  LK   +HLL++
Sbjct: 803 FSKVERKKEGKLVSSNSMSKLKQKVVHLLES 833


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 9   SYNINSMPTFVFVKNGKKLDEFSGAN 86
           S  I +MPTF F  N  K+DE  GA+
Sbjct: 76  SCGIRAMPTFHFYHNKAKIDELRGAD 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,095,105
Number of Sequences: 59808
Number of extensions: 341408
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)