Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0258
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 39 0.003
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 37 0.011
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 37 0.011
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 37 0.011
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 31 0.56
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 31 0.56
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 31 0.56
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 31 0.56
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 31 0.75
Z81111-4|CAB03264.1| 415|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL021447-5|CAA16268.4| 312|Caenorhabditis elegans Hypothetical ... 29 4.0
Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical ... 28 5.3
AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical ... 28 5.3
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 28 6.9
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 28 6.9
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 28 6.9
Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF125951-2|AAD14691.1| 643|Caenorhabditis elegans Hypothetical ... 27 9.2
AF043704-4|AAK21479.1| 109|Caenorhabditis elegans Hypothetical ... 27 9.2
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGAN 86
Y INSMPTF+ + +G K D+FSGAN
Sbjct: 70 YEINSMPTFLLIVDGIKKDQFSGAN 94
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGAN 86
YNI++MPTF+F+KN +++D GAN
Sbjct: 71 YNISAMPTFIFLKNRQQVDMVRGAN 95
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGAN 86
YNI++MPTF+F+KN +++D GAN
Sbjct: 71 YNISAMPTFIFLKNRQQVDMVRGAN 95
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase
protein.
Length = 542
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGAN 86
YNI++MPTF+F+KN +++D GAN
Sbjct: 7 YNISAMPTFIFLKNRQQVDMVRGAN 31
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGANVD 92
+ Y++ MPTF+F KNG ++ G D
Sbjct: 74 SKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGANVD 92
+ Y++ MPTF+F KNG ++ G D
Sbjct: 73 SKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGANVD 92
+ Y++ MPTF+F KNG ++ G D
Sbjct: 73 SKYDVKMMPTFIFTKNGDAIEALEGCVED 101
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGANVD 92
+ Y++ MPTF+F KNG ++ G D
Sbjct: 74 SKYDVKMMPTFIFTKNGDAIEALEGCVED 102
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGAN 86
A+Y +N+MPTF+ NG+K GA+
Sbjct: 68 ATYGVNAMPTFIAFVNGQKKATIQGAD 94
>Z81111-4|CAB03264.1| 415|Caenorhabditis elegans Hypothetical
protein T01G5.4 protein.
Length = 415
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 318 IELFDYNRTNIFCIPEAANTKINIFKFITDVKNIFYSFIKNVYMFFFFNSI 166
+E FD+ + I + AN ++ F +T + +FY I VY+ FF+ +
Sbjct: 253 LEKFDFRQNEILELILFANQSLSSFGSVTPLF-LFYGLINGVYLTSFFDDL 302
>Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical
protein F20E11.1 protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = -1
Query: 326 FYLLNCLITTEPIFFAFQRXQTQKLISSNSLQTLKTFFIHLLKTYTCFFFLI 171
F++L ++ E FF + ++K+ S S++ +F+ + K ++CF F +
Sbjct: 119 FHVLIFVLAVER-FFIYFFPSSEKIFKSLSIKIKHLYFVIIAKDFSCFVFTV 169
>AL021447-5|CAA16268.4| 312|Caenorhabditis elegans Hypothetical
protein F19B2.3 protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 434 LFLSGLLKCIISPILINV*DKFPSCFKNFCK*QV-SQCFFFLCYA 565
LFL G+ C I I+ N+ + FP + + +V S+CF F Y+
Sbjct: 68 LFLIGITVCGIIHIICNIIEFFPMLYDYYLSFKVPSECFPFAPYS 112
>Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical
protein B0024.9 protein.
Length = 119
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSG 80
Y I+++PT KNG+K+ FSG
Sbjct: 80 YGISAVPTVFAFKNGEKISGFSG 102
>AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical
protein D2063.3a protein.
Length = 345
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSG 80
++ I + PT VF NGK++D G
Sbjct: 68 NFKITAAPTLVFFSNGKEVDRIDG 91
>AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical
protein D2063.3b protein.
Length = 342
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSG 80
++ I + PT VF NGK++D G
Sbjct: 68 NFKITAAPTLVFFSNGKEVDRIDG 91
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 18 INSMPTFVFVKNGKKLDEFSGAN 86
+NSMPTF+ ++G ++++ GA+
Sbjct: 72 VNSMPTFMVFQSGVRVEQMKGAD 94
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 18 INSMPTFVFVKNGKKLDEFSGAN 86
+NSMPTF+ ++G ++++ GA+
Sbjct: 72 VNSMPTFMVFQSGVRVEQMKGAD 94
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 18 INSMPTFVFVKNGKKLDEFSGAN 86
+NSMPTF+ ++G ++++ GA+
Sbjct: 72 VNSMPTFMVFQSGVRVEQMKGAD 94
>Z72511-4|CAA96660.1| 395|Caenorhabditis elegans Hypothetical
protein F55A11.7 protein.
Length = 395
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +1
Query: 361 YFYFGFFYQVVAKEL*CMNCYVFIFIFVRLTQMYNLTNTNQCVR*VSIVL*KLL*VTSIT 540
YF +G F + CYVF+F FV LT M+ + + ++ + V S+
Sbjct: 215 YFKYGSFVDFCRRYYIQHLCYVFLFAFV-LT-MFGIAFHGSLIFHETVEFATI--VLSVL 270
Query: 541 MFFFFML 561
FFFF+L
Sbjct: 271 AFFFFVL 277
>AF125951-2|AAD14691.1| 643|Caenorhabditis elegans Hypothetical
protein D2063.2 protein.
Length = 643
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Frame = +2
Query: 362 ISILVF--FTKWLLR--NFNV*IVMFLFLFLSGLL 454
++I++F F KW L+ N N+ +++ F LSG+L
Sbjct: 315 LAIIIFETFEKWYLQLANLNICVLIIAFFMLSGML 349
>AF043704-4|AAK21479.1| 109|Caenorhabditis elegans Hypothetical
protein W01B11.6a protein.
Length = 109
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSGANVD 92
++ +N++PTFV + NG+++ GA +
Sbjct: 71 AFAVNAVPTFVVMNNGEEVTRHVGAEAE 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,826
Number of Sequences: 27780
Number of extensions: 296184
Number of successful extensions: 790
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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