Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0258
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61340.1 68418.m07697 expressed protein 42 3e-04
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 38 0.008
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 35 0.043
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 33 0.13
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 33 0.13
At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identica... 33 0.17
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 33 0.23
At1g43560.1 68414.m05000 thioredoxin family protein contains Pfa... 32 0.40
At1g76760.1 68414.m08933 thioredoxin family protein similar to t... 31 0.70
At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38... 31 0.92
At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i... 31 0.92
At4g04950.1 68417.m00719 thioredoxin family protein similar to P... 30 1.2
At4g32580.1 68417.m04638 thioredoxin family protein contains Pfa... 29 2.8
At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-... 29 3.7
At1g03550.1 68414.m00336 secretory carrier membrane protein (SCA... 28 4.9
At5g35360.1 68418.m04203 acetyl-CoA carboxylase, biotin carboxyl... 27 8.6
At3g53220.1 68416.m05864 thioredoxin family protein low similari... 27 8.6
At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-... 27 8.6
At1g78740.1 68414.m09177 hypothetical protein 27 8.6
>At5g61340.1 68418.m07697 expressed protein
Length = 326
Score = 42.3 bits (95), Expect = 3e-04
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = -1
Query: 287 FFAFQRXQTQKLISSN-SLQTLKTFFIHLLKTYTC-FFFLIPS*FPSAAAYNFSLYLLVF 114
F + KL+S+N S + F++ LLKTY C FFFL+ SA A F+L+ L +
Sbjct: 98 FLLLSKAYVIKLLSNNHSADSSSVFYLRLLKTYVCNFFFLL-----SANASAFALFFLAY 152
Query: 113 KDSCFEFVDVSAREFVQFLAI 51
+ E S+R F FL++
Sbjct: 153 --NTLEAFGFSSRNFYTFLSL 171
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/27 (51%), Positives = 24/27 (88%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGAN 86
AS+NI+S+PTF F+++GK++D+ GA+
Sbjct: 339 ASWNISSVPTFCFIRDGKEVDKVVGAD 365
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 35.1 bits (77), Expect = 0.043
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGANVD 92
+N+ +MPTFV VK GK+++ GA D
Sbjct: 96 FNVTAMPTFVLVKRGKEIERIIGAKKD 122
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGAN 86
+ + +MPTFVF+K G+ +D+ GAN
Sbjct: 78 FGVEAMPTFVFIKAGEVVDKLVGAN 102
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 18 INSMPTFVFVKNGKKLDEFSGANVD 92
+ +MPTF+F+K+G +D+ GAN D
Sbjct: 75 VKAMPTFLFLKDGNAMDKLVGANPD 99
>At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identical
to SP|P29448 Thioredoxin H-type 1 (TRX-H-1) {Arabidopsis
thaliana}
Length = 114
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGANVD 92
+ + I +MPTF+F+K GK LD+ GA D
Sbjct: 75 SDWAIQAMPTFMFLKEGKILDKVVGAKKD 103
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +3
Query: 6 ASYNINSMPTFVFVKNGKKLDEFSGAN 86
+S++I + PTF F+KNG+++ + GAN
Sbjct: 92 SSWDIKATPTFFFLKNGQQIGKLVGAN 118
>At1g43560.1 68414.m05000 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; similar to thioredoxin
GI:142153 from [Synechococcus PCC6301]
Length = 167
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGA 83
Y I ++PTF+ K+GK D F GA
Sbjct: 126 YQIEALPTFILFKDGKLWDRFEGA 149
>At1g76760.1 68414.m08933 thioredoxin family protein similar to
thioredoxin CH2, M-type, chloroplast precursor GB:P23400
SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam
profile: PF00085 Thioredoxin
Length = 172
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGA 83
Y I ++PTF+ K+G+ D F GA
Sbjct: 131 YKIEALPTFILFKDGEPCDRFEGA 154
>At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 129
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSGANVD 92
+Y ++P FVFVK G+++D GA D
Sbjct: 91 TYRAITLPAFVFVKRGEEIDRVVGAKPD 118
>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
{Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
for thioredoxin GI:992965
Length = 118
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGANVD 92
+ + +MPTFVF+K G +D GA D
Sbjct: 76 FKVEAMPTFVFMKEGNIIDRVVGAAKD 102
>At4g04950.1 68417.m00719 thioredoxin family protein similar to
PKCq-interacting protein PICOT from [Mus musculus]
GI:6840949, [Rattus norvegicus] GI:6840951; contains
Pfam profile PF00085: Thioredoxin
Length = 488
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSGAN 86
+Y++ ++P FVF K+GK +D GA+
Sbjct: 69 AYSVAAVPYFVFFKDGKTVDTLEGAD 94
>At4g32580.1 68417.m04638 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 160
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 9 SYNINSMPTFVFVKNGKKLDEFSGAN 86
+Y++ +P FVF K+GK +D GA+
Sbjct: 69 AYSVALVPYFVFFKDGKTVDTLEGAD 94
>At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-M1)
nearly identical to SP|O48737 Thioredoxin M-type 1,
chloroplast precursor (TRX-M1) {Arabidopsis thaliana};
similar to ESTs gb|T13714, gb|H76398, gb|N37762,
gb|AA042639, gb|T21104, emb|Z30901
Length = 179
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 3 PASYNINSMPTFVFVKNGKKLDEFSGA 83
P Y + S+PT + NG+K D GA
Sbjct: 139 PGQYGVRSIPTIMIFVNGEKKDTIIGA 165
>At1g03550.1 68414.m00336 secretory carrier membrane protein (SCAMP)
family protein contains Pfam domain, PF04144: SCAMP
family
Length = 283
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 501 HRALKTFVSNKYHNVFFFYVMQVEACFFNAV 593
+RA +T + K+ FFFYV + C F AV
Sbjct: 175 YRATRTDSALKFGAFFFFYVFHIAFCGFAAV 205
>At5g35360.1 68418.m04203 acetyl-CoA carboxylase, biotin carboxylase
subunit (CAC2) identical to acetyl-CoA carboxylase,
biotin carboxylase subunit (CAC2) [Arabidopsis thaliana]
GI:1905876
Length = 537
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 537 DTCYLQKFLKHDGNLSYTLIS--IGEIIHLSKPD 442
D CYL+KF+++ ++ + +++ G ++H + D
Sbjct: 267 DGCYLEKFVQNPRHIEFQVLADKFGNVVHFGERD 300
>At3g53220.1 68416.m05864 thioredoxin family protein low similarity
to SP|P29451 Thioredoxin [Rhesus macaque] {Macaca
mulatta}; contains Pfam profile: PF00085 Thioredoxin
Length = 126
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 15 NINSMPTFVFVKNGKKLDEFSGA 83
+I PTF F ++G+K+DE GA
Sbjct: 91 HIRYTPTFQFYRDGEKVDEMFGA 113
>At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4)
nearly identical to SP|Q9SEU6 Thioredoxin M-type 4,
chloroplast precursor (TRX-M4) {Arabidopsis thaliana}
Length = 193
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 12 YNINSMPTFVFVKNGKKLDEFSGA 83
Y I S+PT + K G+K D GA
Sbjct: 154 YGIRSVPTVIIFKGGEKKDSIIGA 177
>At1g78740.1 68414.m09177 hypothetical protein
Length = 306
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 130 SIYLCLRIVVLSLSTLA-PENSSSFLPFLTKTNVG 29
+IY+C +V L LST+ P S LPFL +G
Sbjct: 94 TIYICESLVSLKLSTVTLPSVKSVSLPFLRVLKLG 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,966,170
Number of Sequences: 28952
Number of extensions: 247471
Number of successful extensions: 537
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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