Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0257
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2MI42 Cluster: Putative membrane protein ycf1; n=21; M...    36   1.0  
UniRef50_Q98SB8 Cluster: Putative uncharacterized protein orf224...    32   9.7  
UniRef50_A0E2C1 Cluster: Chromosome undetermined scaffold_74, wh...    32   9.7  

>UniRef50_Q2MI42 Cluster: Putative membrane protein ycf1; n=21;
            Magnoliophyta|Rep: Putative membrane protein ycf1 -
            Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
          Length = 1891

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
 Frame = +2

Query: 143  MSVTDYEVLKKIK*KNMFYT*TWKLYYVKNNVDLNLDSFFFE---MVYSIFKQIRPVIHF 313
            + + +Y+++ KI+ K +FY  T   +        N   FFF+   M   IF   RP+++ 
Sbjct: 1470 IGINNYQIIDKIEKKGVFYLTT---HQNPEKTQKNSKKFFFDWMGMNEKIFN--RPILNL 1524

Query: 314  EVT*YVEFICLHVLYIVMTAILKSIYTFLN 403
            E   + EF+ L+ +Y +   I+ S +   N
Sbjct: 1525 EFWFFPEFVLLYNVYKIKPWIIPSKFLLFN 1554


>UniRef50_Q98SB8 Cluster: Putative uncharacterized protein orf224;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf224 - Guillardia theta (Cryptomonas phi)
          Length = 224

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +2

Query: 218 YYVKNNVDL--NLDSFFFEMVYSIFKQIRPVIHFEVT*YVEFICLHVLYIVMTAILKSIY 391
           + +KNN ++  N    FF++   I KQ +   +F +  ++ +IC      V+++I   I 
Sbjct: 61  FILKNNKNMLSNEYGLFFKIFVFIDKQFKNFKNFSLGEFIIWICKKEQTAVVSSIFILIL 120

Query: 392 TFLNFVNSALYWSAIILFK 448
              N      +W+ ++LFK
Sbjct: 121 KIYNADYKNFFWNNLLLFK 139


>UniRef50_A0E2C1 Cluster: Chromosome undetermined scaffold_74, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_74,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 560

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 429 LQYNALFTK--LRNVYILFNIAVITMYKTCKHINSTYYVTSKCITGL 295
           L + +L+ K  LRN YI  ++     Y + K INST  V+S+C T L
Sbjct: 320 LNFESLYDKIKLRNSYIQQSVIDYNQYISKKCINSTLMVSSQCNTNL 366


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,548,559
Number of Sequences: 1657284
Number of extensions: 10997189
Number of successful extensions: 20232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20224
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)