Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0257
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             31   0.76 
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 27   9.4  
SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)                 27   9.4  

>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNILT 9
           + FS LF  +IH+Y I Y T++++ +LT
Sbjct: 65  IHFSPLFTYLIHLYPISYRTIHFSPLLT 92



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNILT 9
           + FS LF  +IH+Y I Y T+++++++T
Sbjct: 225 IHFSPLFTYLIHLYPISYRTIHFSHLVT 252



 Score = 31.1 bits (67), Expect = 0.76
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNILT 9
           + FS LF  +IH+Y I Y T++++ +LT
Sbjct: 285 IHFSPLFTYLIHLYPISYRTIHFSPLLT 312



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNILT 9
           + FS LF  +IH+Y I Y T++++ ++T
Sbjct: 165 IHFSHLFTYLIHLYPISYRTIHFSPLIT 192



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNILT 9
           + FS LF  +IH+Y I Y T++++ + T
Sbjct: 205 IHFSPLFTYLIHLYPISYRTIHFSPLFT 232



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNILT 9
           + FS LF  +IH+Y I Y T++++ + T
Sbjct: 345 IHFSPLFTYLIHLYPISYRTIHFSPLFT 372



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNILT 9
           + FS LF  +IH+Y I Y T++++ + T
Sbjct: 385 IHFSPLFTYLIHLYPISYRTIHFSPLFT 412



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -3

Query: 92 VQFSILFLNIIHVYIIVYNTLYYTNILT 9
          + FS+LF  +I +Y I Y T++++ ++T
Sbjct: 5  IHFSLLFTYLIRLYPISYRTIHFSPLIT 32



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 92  VQFSILFLNIIHVYIIVYNTLYYTNIL 12
           + FS LF  +IH+Y I Y T++ + +L
Sbjct: 405 IHFSPLFTYLIHLYPISYRTIHVSPLL 431


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 40  YT-IMYT*IIFKNNMLNCTIYAA*PKKYLATYLALYVCDGL 159
           YT  + T +IF N+ LN  +YA     Y   +  LY C+ L
Sbjct: 573 YTYFVLTSLIFSNSCLNPVLYAFQSSSYRRGFAKLYTCNCL 613


>SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 354 KTCKHINSTYYVTSKCITGLICL 286
           K  KH+++T  V  KCI GL+ L
Sbjct: 185 KAAKHLDNTTNVCGKCIQGLLLL 207


>SB_10081| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-38)
          Length = 424

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 40  YT-IMYT*IIFKNNMLNCTIYAA*PKKYLATYLALYVCDGL 159
           YT  + T +IF N+ LN  +YA     Y   +  LY C+ L
Sbjct: 354 YTYFVLTSLIFSNSCLNPVLYAFQSSSYRRGFAKLYTCNCL 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,761,733
Number of Sequences: 59808
Number of extensions: 340798
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)