Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0257
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine re...    30   1.5  
AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein24 protein.
          Length = 328

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 438 IIALQYNALFTKLRNVYIL--FNIAVITMYKTCKHINSTYYVTSKCITGLICLNIE 277
           IIA+ ++ L T LRN+ ++  F       Y      NS YY      TG+I L+++
Sbjct: 48  IIAMTFSILNTGLRNILVIRQFMFNYQDYYLAAASYNSVYYFLYIRCTGIIFLSLQ 103


>AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical
           protein F19B2.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +2

Query: 206 TWKLYYVKNNVDLNLDSFFFEM--VYSIFKQIRPVIHFEVT*YVEFIC-LHVLYIVMTAI 376
           T K+Y V+ ++   +D F++ +  +Y++  Q  P I   ++  +  I  L VL  ++T +
Sbjct: 207 TEKMYTVETSITFGIDEFYWIVYYIYAVIFQFIPSILLPISTVLMIISQLSVLAYLLTTL 266

Query: 377 LKSIYTFLNFVNSALYWSAI--ILFKKNI 457
             + +  L +  S  Y +    IL K NI
Sbjct: 267 NVATHWLLCYFMSTQYRNTAREILGKNNI 295


>Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical
           protein T16G1.3 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +2

Query: 278 SIFKQIRPVIHFEVT*YVEFICLHVLYIVMTAILKSIYTFLNFVNSAL----YWSAIILF 445
           SIF+Q+R +   E++   + I +  + +V   ++K++  +L    + L     WSA I++
Sbjct: 190 SIFEQVRQINKEELSEAADKIAVFGVELVNFDLVKNLNNYLGIKKNVLVHGDLWSANIMW 249

Query: 446 KKN 454
           K+N
Sbjct: 250 KEN 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,937,117
Number of Sequences: 27780
Number of extensions: 289684
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)