Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0255
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q38448 Cluster: ORF55; n=8; root|Rep: ORF55 - Bacteriop...    99   6e-20
UniRef50_P03755 Cluster: Protein ea8.5; n=1; Enterobacteria phag...    58   1e-07
UniRef50_A1ADP0 Cluster: Putative uncharacterized protein; n=1; ...    47   3e-04
UniRef50_Q7XGZ6 Cluster: F-box domain containing protein, expres...    35   1.5  

>UniRef50_Q38448 Cluster: ORF55; n=8; root|Rep: ORF55 -
           Bacteriophage 434
          Length = 55

 Score = 99.1 bits (236), Expect = 6e-20
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = -2

Query: 139 RVTGEWNGEPFNRVIEAENINDCYDHWMIWAQIAHADVTNI 17
           RVTGEWNGEPFNRVIEAENINDCYDHWMIWAQIAHADVTNI
Sbjct: 4   RVTGEWNGEPFNRVIEAENINDCYDHWMIWAQIAHADVTNI 44


>UniRef50_P03755 Cluster: Protein ea8.5; n=1; Enterobacteria phage
           lambda|Rep: Protein ea8.5 - Bacteriophage lambda
          Length = 93

 Score = 58.0 bits (134), Expect = 1e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 485 SPCRHHEGVYVDEGIDIESAYKYS 414
           SPCRHHEGVYVDEGIDIESAYKYS
Sbjct: 25  SPCRHHEGVYVDEGIDIESAYKYS 48



 Score = 35.9 bits (79), Expect = 0.64
 Identities = 38/99 (38%), Positives = 49/99 (49%)
 Frame = -2

Query: 556 NELEVLSQKDLGV*SNLCRSGVLVLHADITKVFM*MKV*I*SRHTNIPMEGFYKSNERTN 377
           NELE   QKD  + S LCRSGVL        V++   + I S +    M+  YKSNE  +
Sbjct: 4   NELES-EQKDWAL-SMLCRSGVLSPCRHHEGVYVDEGIDIESAY-KYSMK-VYKSNEDKS 59

Query: 376 PPFLPMLPEEMD*IPLPKLLSRSTGGNDTCPLCYKTL*D 260
           P     + E  D +   +      GGNDTCPLC K + D
Sbjct: 60  P--FCNVREMTDTV---QNYYHEYGGNDTCPLCTKHIDD 93


>UniRef50_A1ADP0 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli APEC O1|Rep: Putative uncharacterized
           protein - Escherichia coli O1:K1 / APEC
          Length = 111

 Score = 46.8 bits (106), Expect = 3e-04
 Identities = 30/52 (57%), Positives = 34/52 (65%)
 Frame = +3

Query: 81  MFSASITLLNGSPFHSPVTREVAI*SSSNKNKNPAGKRSFR*N*NPPPKCED 236
           MFSASITLLNGSPFHSPVTR+       +K K PA   S + N   P +CED
Sbjct: 1   MFSASITLLNGSPFHSPVTRKCIY--HLHKTK-PAVASSDKRN---PRECED 46


>UniRef50_Q7XGZ6 Cluster: F-box domain containing protein,
           expressed; n=5; Oryza sativa|Rep: F-box domain
           containing protein, expressed - Oryza sativa subsp.
           japonica (Rice)
          Length = 415

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 433 SRHTNIPMEGFYKSN-ERTNPPFLPMLPEEMD*IPLPKLLSRSTGGND 293
           SRH   P+ GF+K+   R +P F+P L +  D IP  +   R  GG+D
Sbjct: 180 SRHRKHPLLGFFKAGFRRVDPTFIPTL-DPPDRIPAARFSWRLPGGDD 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,703,223
Number of Sequences: 1657284
Number of extensions: 12470215
Number of successful extensions: 28980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28975
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)