Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0255
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   10.0 
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   10.0 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   10.0 

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 PKCEDCYVILGKSSYNVL*QRGQVSFPP 305
           PK      I+GKS  NV+ Q G+VS+ P
Sbjct: 664 PKGTTLNAIIGKSEENVIVQLGKVSYRP 691


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 472 CLHGEPRHRICTNWIKRPN 528
           C+    RHR+   W+K PN
Sbjct: 831 CIEVRTRHRLHIPWLKMPN 849


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 250 WVNHPIMFCNRE-GKYRFHPYSVIIILATVFSPFPPA 357
           W+N  I  C+ E GK    P  V  ++A+  SP PPA
Sbjct: 613 WIND-ISMCHMENGKVIHSPTHVHNLVASEESPAPPA 648


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 145 WQFNHPPIKTKTPPVSGVSDKIK 213
           W  NHP    + PP+ G    IK
Sbjct: 675 WILNHPDESFEEPPLEGSDSSIK 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,469
Number of Sequences: 5004
Number of extensions: 52137
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)