Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0255
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,241...    35   0.051
08_02_1082 + 24225592-24226422                                         31   0.62 
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081...    29   3.3  
06_01_1176 + 10112257-10113126                                         27   7.7  
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886...    27   7.7  
04_04_0615 + 26633438-26633570,26633711-26633840,26634203-26634836     27   7.7  

>10_01_0228 +
           2417187-2418061,2418127-2418319,2419011-2419025,
           2419859-2419975
          Length = 399

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 433 SRHTNIPMEGFYKSN-ERTNPPFLPMLPEEMD*IPLPKLLSRSTGGND 293
           SRH   P+ GF+K+   R +P F+P L +  D IP  +   R  GG+D
Sbjct: 62  SRHRKHPLLGFFKAGFRRVDPTFIPTL-DPPDRIPAARFSWRLPGGDD 108


>08_02_1082 + 24225592-24226422
          Length = 276

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 372 HFCQCCRRKWTE 337
           HFC+CCRR WT+
Sbjct: 86  HFCKCCRRYWTK 97


>04_04_1273 -
           32307273-32307569,32307659-32307791,32307874-32308105,
           32308220-32308436,32308594-32308718,32309416-32310757
          Length = 781

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 133 TGEWNGEPFNRVIEAENIND 74
           TG WNG  FN V EA N +D
Sbjct: 224 TGPWNGRFFNGVPEASNYSD 243


>06_01_1176 + 10112257-10113126
          Length = 289

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 372 HFCQCCRRKWTE 337
           HFC+ CRR WT+
Sbjct: 55  HFCKACRRYWTK 66


>04_04_0666 +
           27086568-27086975,27087073-27087477,27088542-27088635,
           27088731-27088768,27088853-27088999,27089167-27089266,
           27090001-27090953,27091512-27091569,27092904-27093022
          Length = 773

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 151 FNHPPIKTKTPP 186
           F+HPPIK +TPP
Sbjct: 216 FDHPPIKCRTPP 227


>04_04_0615 + 26633438-26633570,26633711-26633840,26634203-26634836
          Length = 298

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 30  SACAICAHIIQWS*QSLMFSASITLLNGSPFHSPVTREVAI*SSSNKNKNPAG 188
           ++C    H+ QW    L   A ++LL+G+   S  T  VA  SSS+      G
Sbjct: 138 ASCPAARHMAQWETARLEAEARLSLLSGTT--SVATASVAASSSSSSTAAAGG 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,412
Number of Sequences: 37544
Number of extensions: 355284
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)