Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0255
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      30   1.5  
SB_36051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_36576| Best HMM Match : FerB (HMM E-Value=9)                        28   5.9  
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)                  27   7.9  

>SB_5687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 17  NIGYVCMCYLRPYHP 61
           NIGYVCMCYLRPYHP
Sbjct: 109 NIGYVCMCYLRPYHP 123


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 408 KGFISLMKGQIPHFCQCCRRKWTEY 334
           KG + +  G+ P+ C+ C+R +TEY
Sbjct: 778 KGHLRIHTGEKPYTCEFCQRSFTEY 802


>SB_36051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 136 LGKWQFNHPPIKTKTPPVSGVSDKIKIPRRSA 231
           +G W    PP++TKT     +++  +  R+SA
Sbjct: 35  VGTWDMTKPPLRTKTLKTKAMTENAQQKRKSA 66


>SB_36576| Best HMM Match : FerB (HMM E-Value=9)
          Length = 223

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 354 RRKWTEYRCQNYYHGVRVETILALSVTKHYRMIYPILHNNPR 229
           RR  T Y+C  + +  R+ + L   V+ + R I   L N+PR
Sbjct: 91  RRNCTVYKCVCWQYSERMHSSLIELVSSYLRQITHELQNSPR 132


>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
          Length = 970

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 185 GGVFVFIGG*LNCHFPSHRRMEWRAIQQSYRSGEH 81
           GGV+V++   L+C FP      W  I +   S  H
Sbjct: 776 GGVYVYVWDGLSCDFPRDNLEFWLHILRMQASSSH 810


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,836,932
Number of Sequences: 59808
Number of extensions: 393814
Number of successful extensions: 942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)