Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0255
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical p...    28   5.2  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    28   5.2  

>Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical
           protein F36G9.16 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 432 VGIQIFPWKGFISLMKGQIPHFCQCCRRKWTEYRC 328
           +GI I  +   +S++ G +PH+ +  RR  T + C
Sbjct: 73  IGIAICDFLRLLSVVLGALPHYYKLYRRSITPHNC 107


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -2

Query: 379 NPPFLPMLPEEMD*IPLPKLLSRSTGGNDTCPLCYK---TL*DDLPNI 245
           N PFLP   EE+D +   +  ++ST G ++  L +K   TL + +P I
Sbjct: 113 NVPFLPGFLEELDDLLAGETTAKSTSGEESKFLSFKDDATLLNTIPTI 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,928
Number of Sequences: 27780
Number of extensions: 297173
Number of successful extensions: 746
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)