Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0255
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30135.1 68414.m03684 expressed protein                             29   2.8  
At5g55410.1 68418.m06903 protease inhibitor/seed storage/lipid t...    27   8.5  
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    27   8.5  
At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing ...    27   8.5  
At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ...    27   8.5  
At3g24090.1 68416.m03025 glucosamine--fructose-6-phosphate amino...    27   8.5  
At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing ...    27   8.5  
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    27   8.5  

>At1g30135.1 68414.m03684 expressed protein
          Length = 131

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 78  LMFSASITLLNGSPFHSPVTREVAI*SSSNKNKNPAGKRSFR*N*NPPPK 227
           + FS+ +T L      S  +RE+   SSSN +  P    SF  N  P PK
Sbjct: 54  MCFSSDVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPK 103


>At5g55410.1 68418.m06903 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           profile: PF00234 protease inhibitor/seed storage/LTP
           family
          Length = 107

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 NPPPKCEDCYVILGKSSYNVL 275
           NPPP   DC V++ K+++  L
Sbjct: 52  NPPPPVNDCCVVVRKANFECL 72


>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
           class), putative (RPS4) domain signature TIR-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS4 (GI:11357255). False intron created at
           intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 142 KWQFNHPPIKTKTPPVSGVSDKIKIPRRSARIVM*YWVNHPI 267
           K+  +H P + KT     + DK+K+P +  R +  +W+  P+
Sbjct: 588 KFYNSHCPQECKTNNKINIPDKLKLPLKEVRCL--HWLKFPL 627


>At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing
           protein zinc finger protein OBP3, Arabidopsis thaliana,
           EMBL:AF155818
          Length = 399

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 372 HFCQCCRRKWT 340
           HFC+ CRR WT
Sbjct: 120 HFCKACRRYWT 130


>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
           protein 
          Length = 253

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 372 HFCQCCRRKWT 340
           HFC+ CRR WT
Sbjct: 55  HFCKACRRYWT 65


>At3g24090.1 68416.m03025 glucosamine--fructose-6-phosphate
           aminotransferase [isomerizing], putative /
           hexosephosphate aminotransferase, putative /
           glucosamine-6-phosphate synthase, putative /
           D-fructose-6-phosphate amidotransferase, putative /
           GLCN6P synthase, putative similar to SP|O94808
           Glucosamine--fructose-6-phosphate aminotransferase
           [isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate
           aminotransferase 2) (D-fructose-6- phosphate
           amidotransferase 2) {Homo sapiens}; contains Pfam
           profiles PF00310: Glutamine amidotransferases class-II,
           PF01380:SIS domain
          Length = 691

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 169 KTKTPPVSGVSDKIKIPRRSARIV 240
           KTKT  + G+ D +K  RRS RIV
Sbjct: 355 KTKTVLLGGLKDHLKTIRRSRRIV 378


>At3g21270.1 68416.m02688 Dof-type zinc finger domain-containing
           protein (ADOF2) identical to Dof zinc finger protein
           ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical
           to cDNA adof2 mRNA for Dof zinc finger protein
           GI:3608262; contains Pfam profile PF02701: Dof domain,
           zinc finger
          Length = 204

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 372 HFCQCCRRKWTE 337
           HFC+ CRR WT+
Sbjct: 54  HFCKSCRRYWTK 65


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 372 HFCQCCRRKWT 340
           HFC+ CRR WT
Sbjct: 119 HFCKACRRYWT 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,734
Number of Sequences: 28952
Number of extensions: 284748
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)