Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0254
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.9  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 362 KLNKAGFNVPESYSLLKMPPVGCLISALKKAEDRQEVILRLFNPAESATVMRL 520
           K NK  F+VP ++   +  P+G  I+     +  +++ L+   P +   ++ L
Sbjct: 22  KGNKEVFDVPNNFLPERYKPIGVQIANRFGEQANEKIPLKDITPPDLEGILDL 74


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 281 TAAGVAQQARAWLTPVQCYNKIPWDVMKLNK 373
           T        R W T    YN  PW  + LNK
Sbjct: 517 TGEAACDPYRPWQT---VYNHRPWQQLHLNK 544


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 241 SRPRSCESGTGILIPE 194
           SRPR CE    + +PE
Sbjct: 97  SRPRRCELAAQLNLPE 112


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 586 PRW*CVHPSSFLSKKSPR 533
           PRW C   SS  +   PR
Sbjct: 53  PRWGCARASSATTMGGPR 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,850
Number of Sequences: 336
Number of extensions: 3890
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)