Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0254
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       29   0.66 
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    28   1.2  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    27   2.0  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    27   2.7  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   3.5  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   4.7  

>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 338 NKIPWDVMKLNKAGFNVPESYSLLKMPPVGCLISALKKAEDRQEVIL-RLFNPAESATVM 514
           N  P+D ++  ++   VP+ Y+L+  P  G  +S L+K    QE+I+ +L +  E     
Sbjct: 452 NLSPYDTVENLQSFIAVPKKYNLVLQPQSGTNLSPLQKDGIYQEMIVTKLLDVTELPVRF 511

Query: 515 RLLLSV 532
           +L   V
Sbjct: 512 KLTYKV 517


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 39  ALQEGRNGMAVFSEGLREFEVIGEEKKTFAI 131
           +L+E +    +FS    EF+ +  EKKTF I
Sbjct: 407 SLEENKKSKELFSLSASEFDKLNSEKKTFEI 437


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 149 GLTGQRRSAFKAWAAFGN*NASPGLTTTWSAFLSPSLLSYTGTPTAAGVA 298
           G TG R   ++    F N N SP L   +   + P L S+ G P  A  +
Sbjct: 141 GSTGSRVHVYQ----FNNCNPSPKLEEEFFKMIEPGLSSFAGDPEGAAAS 186


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 178 KSRSSLPSKPTPRSNVMAKVFFSSPMTSN-SRNPSLKTAM 62
           + R +    PT  S    +V  SSP TS  SR PSL+ A+
Sbjct: 274 QERKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAV 313


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 541 ISCSETMMDEHITT-EENQGSNLSGPFL 621
           I CS  ++DE++TT  EN+G  + G  L
Sbjct: 47  IVCSRPIVDENVTTWPENEGFRIEGTLL 74


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 359 SHPMGFCCNTVLESAMLAPAELHQRRLAYRYNSIN*ATRKQ 237
           S   GF C T  E A  A  E++QR LA +   +  A RK+
Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 175 SRSSLP---SKPTPRSNVMAKVFFSSPMTSNSRNPSLKTAMPLRPSCKAT 35
           S SSLP   SKPT    V      SSP T+N  N S  +A P+ P    T
Sbjct: 192 SFSSLPLVSSKPTGTPFVPKSPPSSSPSTTNVSNASTSSA-PINPRAPQT 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,786
Number of Sequences: 5004
Number of extensions: 63532
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)