Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0254
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    31   0.91 
12_02_0279 - 16704284-16704925                                         31   1.2  
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916...    30   2.1  
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101...    29   4.8  
06_03_1367 + 29607008-29607501,29608726-29608906,29609006-296090...    28   6.4  
05_05_0321 + 24091997-24092530                                         28   6.4  
12_02_0189 + 15165485-15168694                                         28   8.5  

>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 259 IELYRYANRRWCSSAGASMADSSTVLQQNPMGCDEAQQSRIQRAGKL*FVENAP 420
           I+ +RY N R  SS+ A+ A ++ VL  +    +  ++ R++RAGK   V N P
Sbjct: 41  IDSFRY-NPRPSSSSAAAAATATVVLSDDDDDFELGEEERLRRAGKSTRVLNRP 93


>12_02_0279 - 16704284-16704925
          Length = 213

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 380 FNVPESYSLLKMPPVGCLISALKKAEDRQEVILRLFNPAESATV 511
           F +P+     K  P  CLISA    ED   +++ L N   S  V
Sbjct: 153 FEIPQDSCSHKKSPESCLISAASLCEDHNHLMILLSNMIRSVVV 196


>10_05_0101 -
           9167383-9167679,9167883-9167961,9168161-9168326,
           9169201-9169299,9169969-9171361
          Length = 677

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 380 FNVPESYSLLKMPPVGCLISALKKAEDRQEVILRLFNPAESATV 511
           F +P+  S LK  P  C ISA    ED   + + + N   S  V
Sbjct: 378 FKIPQDSSSLKESPESCSISAASLCEDHNHLSVLISNMFRSVVV 421


>07_01_0139 -
           1014952-1015165,1015271-1015350,1015420-1015629,
           1015925-1016044,1016650-1016709,1017129-1017204,
           1018189-1018352,1018428-1018490,1018815-1018902,
           1018997-1019647,1019965-1020449
          Length = 736

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 214 TGILIPEGRPGLKSRS-SLPSKPTPRSNVMAKVFFSSPMTSNSRNP 80
           T + I E  P   SR   L S P+P +N++  V+F  P+ ++ R+P
Sbjct: 682 TPLSIQEVAPNFSSRPLGLTSNPSPSANLVNTVYF--PIANSQRSP 725


>06_03_1367 +
           29607008-29607501,29608726-29608906,29609006-29609065,
           29609486-29609649,29609723-29609888,29609889-29609957,
           29610060-29610155,29610345-29610389,29610765-29610835,
           29610996-29611062,29611150-29611200,29611276-29611686
          Length = 624

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 610 GPFLPGYPIRPIVSR 654
           G F+PGYP++P++ R
Sbjct: 276 GAFIPGYPVQPVIVR 290


>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 253 RRQESRPRSCESGTGILIPEGRPGLKSRSSLPSKPTPRSNV 131
           RR +SR     SG G+L+    PGL +RS    +P  R  +
Sbjct: 118 RRSDSRGSCGGSGDGVLLNFYVPGLLTRSMTTPRPAARGTL 158


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 199 PEGRPGLKSRSSLPSKPTPRSNVMAKVFFSSPMTSNSRNP 80
           P  +P L ++  +P KP P++ +M  +     + S+SR P
Sbjct: 461 PSVKPSLNAKVMVPEKPVPKAELMLPL--KENLRSHSRTP 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,136,214
Number of Sequences: 37544
Number of extensions: 470560
Number of successful extensions: 1114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)