Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0254
         (714 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2186|AAF49883.1|  697|Drosophila melanogaster CG10969-P...    31   2.1  
AE014296-2483|AAN11792.1|  175|Drosophila melanogaster CG6988-PB...    25   8.3  
AE014134-318|AAF51323.1| 1023|Drosophila melanogaster CG15356-PA...    29   8.3  

>AE014296-2186|AAF49883.1|  697|Drosophila melanogaster CG10969-PA
           protein.
          Length = 697

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
 Frame = -3

Query: 202 IPEGRPGLKSRSSLPSKPTPRSNVMAKVFFSS------PMTSNSR---NPSLKTAMPLRP 50
           +P G+  ++SRSS P  PTPR    A V  S       P+ S+S+   +  LK  MP++P
Sbjct: 47  LPSGQEAVRSRSSCP--PTPRRRRQASVCRSMGSPEFVPLMSHSKPKASVRLKAGMPVKP 104


>AE014296-2483|AAN11792.1|  175|Drosophila melanogaster CG6988-PB,
           isoform B protein.
          Length = 175

 Score = 24.6 bits (51), Expect(2) = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 106 PMTSNSRNPSLKTAMPLRPSCKAT*LSIFHTGT 8
           P+ S SR P  +   P R SCK+   + +HT T
Sbjct: 135 PIPSPSRRPRRRRRRPRRTSCKS---NNYHTPT 164



 Score = 22.6 bits (46), Expect(2) = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 232 RSCESGTGILIPEGRPGLKSRSSLPSKPTPRSNVMAK 122
           RS  +   + +P   P   S  +L S+P+P+SN  A+
Sbjct: 71  RSTRTMRILSLPRWTPLPTSWRALRSRPSPQSNTSAR 107


>AE014134-318|AAF51323.1| 1023|Drosophila melanogaster CG15356-PA
           protein.
          Length = 1023

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 223 ESGTGILIPEGRPGLKSRSSLPSKPTPRSNVMAKVFFSSPMTSNSRNPSLKTAMPLRPSC 44
           E+ +GI   +G+P  K     P    P      +   S  +  NS NP ++ A P+ P  
Sbjct: 188 ENDSGI---DGKPNKKRHMQQPHPQQPHLQASQQQQQSQQLNPNSSNPGMEEADPVPPEK 244

Query: 43  KAT 35
           + T
Sbjct: 245 RMT 247


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,248,403
Number of Sequences: 53049
Number of extensions: 767450
Number of successful extensions: 1952
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3170136354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)