Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0254
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL032623-5|CAA21512.1|  533|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = -3

Query: 331 LYWSQPCSRLLSYTSGGWRTGITQ*TRRQESRPRSCESGTGILIPEGRPGLKSRSSLPSK 152
           L W +   R  +Y         +Q  RR+     S +      +  GR   +SRS  PS+
Sbjct: 122 LSWFRDIRRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSR 181

Query: 151 PTPRSNVMAKVFFSSPMTSNSR 86
              RS   +     SP + N R
Sbjct: 182 SRSRSRSRSVSRSKSPASRNGR 203


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = -3

Query: 331 LYWSQPCSRLLSYTSGGWRTGITQ*TRRQESRPRSCESGTGILIPEGRPGLKSRSSLPSK 152
           L W +   R  +Y         +Q  RR+     S +      +  GR   +SRS  PS+
Sbjct: 122 LSWFRDIRRYCAYQRAKQVRSNSQRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSR 181

Query: 151 PTPRSNVMAKVFFSSPMTSNSR 86
              RS   +     SP + N R
Sbjct: 182 SRSRSRSRSVSRSKSPASRNGR 203


>AL032623-5|CAA21512.1|  533|Caenorhabditis elegans Hypothetical
           protein Y43F8B.4 protein.
          Length = 533

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/106 (23%), Positives = 42/106 (39%)
 Frame = +2

Query: 260 LSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDVMKLNKAGFNVPESYSLLKMPPVGCLIS 439
           L +TG P+ A + +  +A +  +      PW ++  N  G+  P  Y  L       L+ 
Sbjct: 122 LIHTGRPSFARIFEGLQANINSLDLSTAEPWQILSYNADGYYAPH-YDYLNPATNVQLVE 180

Query: 440 ALKKAEDRQEVILRLFNPAESATVMRLLLSVAR*FLAQKR*WMNTL 577
                     VIL++     +    RL L++ R        W+NTL
Sbjct: 181 GRGNRIATVLVILQIAKKGGTTVFPRLNLNI-RPKAGDVIVWLNTL 225


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 187  GGLRELKCQSRTHNYVVCFLVA*FIELYRYANRRWCSS 300
            G  ++++  S   NYV C L+   IE+Y+ A R++  S
Sbjct: 2408 GHAQKIEAVSVDDNYVACMLLRGPIEIYKMAYRQYSKS 2445


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical protein
            T01H10.8 protein.
          Length = 2692

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 187  GGLRELKCQSRTHNYVVCFLVA*FIELYRYANRRWCSS 300
            G  ++++  S   NYV C L+   IE+Y+ A R++  S
Sbjct: 2408 GHAQKIEAVSVDDNYVACMLLRGPIEIYKMAYRQYSKS 2445


>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical
           protein T07D4.3 protein.
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 511 DATVAFSREVISCSETM--MDEHITTEENQGSNLSGPFLPGYPIRPIVSRITIHWAVVLQ 684
           D +   +  V SC   +  ++E   T E   S L+   L  +P+  I S   I WA  LQ
Sbjct: 273 DLSTRVTEYVRSCGLELPEINETSATPEAPTSLLTDVKLAQFPVSEICSASNISWAPPLQ 332

Query: 685 RRDWGKPWR 711
             +W  PWR
Sbjct: 333 --NW-NPWR 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,099,482
Number of Sequences: 27780
Number of extensions: 376174
Number of successful extensions: 1058
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)