Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0254
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.71 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 205 KCQSRTHNYVVCFLVA*FIELYRYANRRWCSSAGASMADSSTVLQQNPMGCDEAQQSRIQ 384
           KC  R  N          +E Y+   +R CS+ G   + S T L  +P    +A  + +Q
Sbjct: 560 KCFMRVENVKGAVWTVDEVEFYKRRPQRACSTTGGVPSKSPT-LTHSPTMYGDALNANLQ 618

Query: 385 RA 390
            A
Sbjct: 619 AA 620


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 212 WHFNSRRPPRP*KQIFFA 159
           WH N   P  P  QIFFA
Sbjct: 407 WHSNLTTPDDPDIQIFFA 424


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +2

Query: 557 R*WMNTLPPRKIKVQIYRGLFYP 625
           R W++  P R  ++ +   +F+P
Sbjct: 402 RSWLSKFPTRSKRIDVISRIFFP 424


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +2

Query: 557 R*WMNTLPPRKIKVQIYRGLFYP 625
           R W++  P R  ++ +   +F+P
Sbjct: 402 RSWLSKFPTRSKRIDVISRIFFP 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,703
Number of Sequences: 438
Number of extensions: 4955
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)