Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0254
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28420.1 68414.m03494 homeobox transcription factor, putative...    31   1.0  
At2g45670.1 68415.m05678 calcineurin B subunit-related contains ...    29   3.1  
At2g40070.1 68415.m04923 expressed protein                             29   4.0  
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie...    28   5.3  
At2g47760.1 68415.m05962 ALG3 family protein contains Pfam profi...    28   7.1  
At4g29950.2 68417.m04261 microtubule-associated protein identica...    27   9.3  
At4g29950.1 68417.m04260 microtubule-associated protein identica...    27   9.3  
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ...    27   9.3  

>At1g28420.1 68414.m03494 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7 GI:19486
            [Lycopersicon peruvianum]
          Length = 1703

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 427  SHWGH-FQQTITFRHVESGFVELHHIPWDFVVTLYWSQPCSRLL 299
            S+ GH  ++   +R +  G    H+  W F V++  S PCSRLL
Sbjct: 1085 SYIGHKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLL 1128


>At2g45670.1 68415.m05678 calcineurin B subunit-related contains
           Pfam PF00036: EF hand domain and Prosite PS00018:
           EF-hand calcium-binding domain; contains Pfam profile
           PF01553: Acyltransferase; weak similarity to Calcineurin
           B subunit isoform 2 (Protein phosphatase 2B regulatory
           subunit 2) (Protein phosphatase 3 regulatory subunit B
           alpha isoform 2) (Swiss-Prot:Q63811) [Mus musculus]
          Length = 539

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 610 GPFLPGYPIRPIVSR 654
           G F+PGYPI+P+V R
Sbjct: 266 GAFIPGYPIQPVVVR 280


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -3

Query: 241 SRPRSCESGTGI--LIPEGRPGL---KSRSSLPSKPTPRSNVMAKVFFSSPMTSNSRNPS 77
           SR  S   G G     P GR       S+SS PS PT R+ V +    + P  +NSR+  
Sbjct: 173 SRRPSSSGGPGSRPATPTGRSSTLTANSKSSRPSTPTSRATVSSA---TRPSLTNSRSTV 229

Query: 76  LKTAMPLRPSCKAT*LS 26
             T  P  P  ++T LS
Sbjct: 230 SATTKP-TPMSRSTSLS 245


>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
           PIR:S53363
          Length = 438

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -3

Query: 250 RQESRPRSCESGTGILI-PEGRPGLKSRSSLPSKPTPRSNVMAKVFFSSPMTSNSRN--- 83
           R ES P S  + +G  I P   P ++S SS+P K T  + + A    SSP  + SR+   
Sbjct: 104 RSESDPSSRPTRSGSTIRPSNIPTIRS-SSVPKKTTT-TQIQASASVSSPKRTVSRSLTP 161

Query: 82  PSLKTAMP 59
            S KT  P
Sbjct: 162 SSRKTPSP 169


>At2g47760.1 68415.m05962 ALG3 family protein contains Pfam profile:
           PF05208 ALG3 protein
          Length = 438

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 229 YVVCFLVA*FIELYRYANRRWCSSAG 306
           + VC L+A    L  +AN +WC   G
Sbjct: 276 FAVCLLIAHLFLLVAFANYKWCKHEG 301


>At4g29950.2 68417.m04261 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 703

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 499 ISNRDATVAFSREVISCSETMMDEHITTEENQGSNLSGPFLP 624
           ++N D+++  + ++ +  ET  +E I  EEN     S P  P
Sbjct: 439 VNNEDSSIRETEDINTDFETAAEESIVMEENSSDLFSDPNSP 480


>At4g29950.1 68417.m04260 microtubule-associated protein identical
           to microtubule-associated protein GI:5032258 from
           [Arabidopsis thaliana]; similar to TBC1 domain family
           member 5 (Swiss-Prot:Q92609) [Homo sapiens]; contains
           Pfam profile PF00566: TBC domain
          Length = 828

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 499 ISNRDATVAFSREVISCSETMMDEHITTEENQGSNLSGPFLP 624
           ++N D+++  + ++ +  ET  +E I  EEN     S P  P
Sbjct: 564 VNNEDSSIRETEDINTDFETAAEESIVMEENSSDLFSDPNSP 605


>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 419

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 577 TTEENQGSNLS-GPFLPGYPIR 639
           T E N+  +LS GP LPG+P++
Sbjct: 224 TAENNENGDLSIGPILPGHPLQ 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,372,268
Number of Sequences: 28952
Number of extensions: 355333
Number of successful extensions: 895
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)