Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0253
         (663 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Y7M8 Cluster: Putative uncharacterized protein; n=2; ...    35   1.5  
UniRef50_A3PPD5 Cluster: Dihydrodipicolinate synthetase; n=2; Rh...    34   2.7  

>UniRef50_Q4Y7M8 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 2337

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +1

Query: 121 SSKNIFQYRLNT-----PQSSAPDTLLNIFMIKP*KLVLFRPKITKFHYLMSSYRKTLCW 285
           S K + Q ++NT     P+SS  + + N+F IKP +   + P     +YL  SY     +
Sbjct: 381 SEKEVKQNKMNTNIDDEPKSSVTNKIFNVFEIKPHESFYYHPLHANKYYLKFSYTNINDY 440

Query: 286 CNNYGVIKINRYNEM 330
            NN    + + Y  M
Sbjct: 441 INNNIQFQKDSYEHM 455


>UniRef50_A3PPD5 Cluster: Dihydrodipicolinate synthetase; n=2;
           Rhodobacter sphaeroides|Rep: Dihydrodipicolinate
           synthetase - Rhodobacter sphaeroides (strain ATCC 17029
           / ATH 2.4.9)
          Length = 308

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 8   RRELVSSFFFFFCVPISPTMEV-FQDYPLFLGHPVNQTVVRKI 133
           R + +  +F   C  + P + V FQD+PL  G PV+  ++R++
Sbjct: 116 REDRIEGYFHAVCEALGPEVPVCFQDFPLATGLPVSPALIRRL 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,042,346
Number of Sequences: 1657284
Number of extensions: 11649640
Number of successful extensions: 24904
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24881
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)