Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0253
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    26   4.2  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.4  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   9.7  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   9.7  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.7  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 17  LVSSFFFFFCVPISPTMEVFQDYPLFLGHPVNQTVVRKIYSNI 145
           L  S F  FC+ I+    +  D+   L  P  + V + +Y+N+
Sbjct: 288 LTVSLFMGFCIMITIAGTMGHDFSSILNTPYGEPVSQVLYNNL 330


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 313 NRYNEMVRLNSDIKPSTNNSNHSPS 387
           +R +E++ LN + KP+ +N NH  S
Sbjct: 875 DRASELLSLNGENKPAESNLNHLTS 899


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 41  FCVPISPTMEVFQDYPLFLGHPVNQTVVRK 130
           F VP+ P  +   DYP  + +P++   + K
Sbjct: 109 FKVPVDPIKQNIPDYPTIVKNPMDLGTIEK 138


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 395 CPSDGEWLLLFVDGLMSEFNLTISL 321
           CP      L+ ++ LMSE +LTI+L
Sbjct: 80  CPPKRSIALVLLNNLMSEMSLTIAL 104


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 478 LGDSHIQISSDYNNSSLIQ--TITPN 549
           L D+H+ + S +NNS L+Q  +IT N
Sbjct: 319 LPDNHLFVGSHFNNSVLLQLPSITKN 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,794
Number of Sequences: 5004
Number of extensions: 52826
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)