Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0253
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_43299| Best HMM Match : MTS (HMM E-Value=3.8e-06)                   28   5.9  

>SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 449 NFSIKSNIN----I*GILTYKLVQIIIILLSYKQSHQTNVFSP 565
           N SIK+NIN    +  I+   +V I+I  LSY   H T V SP
Sbjct: 16  NTSIKNNINFYHIVSNIIIAIIVTIVISPLSYHHRHTTIVISP 58


>SB_43299| Best HMM Match : MTS (HMM E-Value=3.8e-06)
          Length = 250

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +2

Query: 341 IQTSSRPRTTVTTHHQKGSVLTIMFLVQSSYGRWRWNFSIKSNINI 478
           ++ SS+ +  VT + Q+G V++      S +G W++NF +K  +++
Sbjct: 16  MRISSQTKKRVTIN-QRGYVVSPTVFDGSVFGEWKYNFFVKELVSM 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,335
Number of Sequences: 59808
Number of extensions: 361761
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)