Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0253
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 265 YRKTLCWCNNYGVIKINRYNEMVRLNSDIKPSTNNSNHSPSEGQCAHYNVFST 423
           YR  L      G+I   R+NE +R++S   P+ N S  S +        VFST
Sbjct: 504 YRVQLFTVTKTGIISETRHNETIRMSS---PAVNVSLESVTRSSATLRIVFST 553


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 265 YRKTLCWCNNYGVIKINRYNEMVRLNSDIKPSTNNSNHSPSEGQCAHYNVFST 423
           YR  L      G+I   R+NE +R++S   P+ N S  S +        VFST
Sbjct: 504 YRVQLFTVTKTGIISETRHNETIRMSS---PAVNVSLESVTRSSATLRIVFST 553


>AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical
           protein ZK105.8 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 431 YGRWRWNFSIKSNINI*GILTYKLVQIIIILLSYKQSHQT 550
           Y +W   FSI+++  I  IL+  ++QI  +L S+ + HQ+
Sbjct: 62  YSKW---FSIRTHFQINMILSLIVLQICSLLCSFMRKHQS 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,880
Number of Sequences: 27780
Number of extensions: 287711
Number of successful extensions: 621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)