Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0253
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01080.1 68417.m00146 expressed protein                             29   2.8  
At5g41620.1 68418.m05057 expressed protein weak similarity to mi...    27   8.4  

>At4g01080.1 68417.m00146 expressed protein 
          Length = 442

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 4   HEERTSLEFFFFFLCPH*PYYGGVSGLSIISGTPCKPDGSSKNI 135
           H  RT ++FF +F      YY  +S L++    P  P  S  N+
Sbjct: 43  HRHRTFVKFFLYFSLVALAYYFIISSLAVSPIPPTLPQSSPGNV 86


>At5g41620.1 68418.m05057 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 (GI:2773363)
           [Drosophila melanogaster]; weak similarity to
           Synaptonemal complex protein 1 (SCP-1 protein)
           (Swiss-Prot:Q15431) [Homo sapiens]; weak similarity to
           DNA double-strand break repair rad50 ATPase.
           (Swiss-Prot:P58301) [Pyrococcus furiosus]
          Length = 543

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 262 SYRKTLCWC-NNYGVIKINRYNEMVRLNSDIKPSTNNSNHSPSEGQCAHYN 411
           ++   + W  ++ G  K  R  E      D+KP  +N+N  P E +CA  N
Sbjct: 409 NFEDQMAWALSSNGKKKTTRAIEDEEEEEDVKPENSNNNKKP-ENECATTN 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,578
Number of Sequences: 28952
Number of extensions: 250780
Number of successful extensions: 501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)