Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0252
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.70 
UniRef50_Q4YTI8 Cluster: Putative uncharacterized protein; n=3; ...    36   1.2  
UniRef50_Q9SA63 Cluster: F10O3.11 protein; n=19; Magnoliophyta|R...    34   3.7  
UniRef50_Q19ZL0 Cluster: Gp57; n=2; unclassified Siphoviridae|Re...    34   3.7  
UniRef50_Q17EY1 Cluster: Olfactory receptor, putative; n=1; Aede...    34   3.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -3

Query: 370 AGWWYLIVRTHKRSYHQ 320
           A WWYL  RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q4YTI8 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 420

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -2

Query: 149 NEYTIIIFLSCTDVSKICLVNLYSILIYKSTVFFTDVPL 33
           N+Y IIIF+    +  ICL  L+  LIY+S  + TD+ L
Sbjct: 289 NKYNIIIFICSYILYFICLSGLFHCLIYQSEFYNTDITL 327


>UniRef50_Q9SA63 Cluster: F10O3.11 protein; n=19; Magnoliophyta|Rep:
           F10O3.11 protein - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 247

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +1

Query: 97  QILLTSVQDRKIIIVYSFLVYFLFASSSYSCHLIACSSPIVQPSP-YFYYRNH*AISLIL 273
           Q+L T      ++ V    V+F   S+  +  ++   +P++   P Y+Y++ H    L+L
Sbjct: 49  QLLATIAVASTVVFVRPIAVFFATTSAGLALWIVLIITPLIVMCPLYYYHQKHPVNYLLL 108

Query: 274 -----VLRSHVHLSCKL*AFTGGRTSCESARLGT 360
                 L   V L+C   AFT G+   E+A L T
Sbjct: 109 GIFTVALAFAVGLTC---AFTSGKVILEAAILTT 139


>UniRef50_Q19ZL0 Cluster: Gp57; n=2; unclassified Siphoviridae|Rep:
           Gp57 - Mycobacterium phage Orion
          Length = 122

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -2

Query: 398 RHYCFTVEIGGVVVPNRADSQEVLPPVKA*SLHDKWTWL 282
           R+Y  T   GG VVP R+   EV P   A  LHD+  WL
Sbjct: 83  RYYASTSCDGGYVVPRRSKGIEVYPVTDATVLHDEPGWL 121


>UniRef50_Q17EY1 Cluster: Olfactory receptor, putative; n=1; Aedes
           aegypti|Rep: Olfactory receptor, putative - Aedes
           aegypti (Yellowfever mosquito)
          Length = 382

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +1

Query: 16  ARFSSYNGTSVKNTVDLYISIEYRFTKQILLTSVQDRKIIIVYSFLVYFLFASSSYSCHL 195
           +R   Y   ++    DLY    Y+F K +    +     I+    L  F+F         
Sbjct: 101 SRRFQYKSKTISELFDLYYYRNYQFCKVLYSAYISSAVSIL----LAPFVFPIPEQYDLP 156

Query: 196 IACSSPIVQP-SPYFYYRNH*AISLILVLRSHVHLSCKL*AFTGGRTSC 339
            AC+  +++P  PYFY  N+   ++++    HV ++  L   TG  ++C
Sbjct: 157 AACTISLIEPAEPYFYPVNYIFQAIVIFSVQHVLIAQCLSLVTGIMSAC 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 702,895,692
Number of Sequences: 1657284
Number of extensions: 14242598
Number of successful extensions: 27558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27555
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)