Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0252
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412...    33   0.21 
08_02_1420 + 26942777-26942905,26944415-26944511,26944596-269449...    29   4.5  
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631...    28   7.9  

>07_01_0554 -
           4121692-4121895,4121991-4122148,4123241-4123354,
           4123824-4124082
          Length = 244

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +1

Query: 97  QILLTSVQDRKIIIVYSFLVYFLFASSSYSCHLIACSSPIVQPSPYFYYRNH*AISLILV 276
           Q+LLT+     ++ V +   +F+ + +    ++     P +   P +YY     ++LIL+
Sbjct: 46  QLLLTAAVAAVVVKVRAISHFFVSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILL 105

Query: 277 LRSHVHLSCKL---*AFTGGRTSCESARLGT 360
               V +S  +    AFT G+   ESA L T
Sbjct: 106 GLFTVAISFAVGMTCAFTSGKVILESAILTT 136


>08_02_1420 +
           26942777-26942905,26944415-26944511,26944596-26944962,
           26945286-26945793
          Length = 366

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 130 IIIVYSFLVYFLFASSSYSCHLIACSSPIVQPSPYFYYRNH 252
           I+++    VYF  +SS +SCH I C     + + Y    +H
Sbjct: 43  IVLLKELRVYFKISSSEFSCHFI-CREGEAEQTSYHTVGDH 82


>01_05_0222 +
           19462487-19462663,19462916-19462991,19463106-19463185,
           19463293-19463342,19463436-19463520,19463640-19463738,
           19464110-19464346
          Length = 267

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
 Frame = +1

Query: 154 VYFLFASSSYSCHLIACSSP-------IVQPSPYFYYRNH 252
           VYF+FA+++ S + IA S P       I+ P P+F  R+H
Sbjct: 128 VYFMFANATVSFNQIASSYPGPLSLVSILCPDPHFKKRHH 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,751,630
Number of Sequences: 37544
Number of extensions: 392666
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)