Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0252
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   1.8  
Z81130-6|CAB03419.4|  312|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    27   9.4  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 589 DLPDETSKLA-SFFIYCLDGWKSSEPTWVK*LLGPIY-NVNTPPTLR 455
           D+P E  +L  S   + L  WK +  +W+  LLG  Y NV+ P +LR
Sbjct: 78  DVPLENGELTNSVAEHVLQMWKDNPRSWIVLLLGNRYGNVSVPTSLR 124


>Z81130-6|CAB03419.4|  312|Caenorhabditis elegans Hypothetical
           protein T23G11.7b protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 143 IRFWCIFYSLRALTHAILSRVVPR*YNLRLIFTTEITKPYL 265
           I +WC+FY+++       S V  R Y   L+ T E  K  L
Sbjct: 29  IYYWCLFYAVQTAMKLDKSTVEARQYLTGLLTTLEAIKTQL 69


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 91  TKQILLTSVQDRKIIIVYSFLVYFLFASSSYSCH 192
           T QILL S+Q + I  V++  V FL   +SY+ H
Sbjct: 108 THQILLESLQCKPIAEVFTKFVPFLKLYTSYASH 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,058,792
Number of Sequences: 27780
Number of extensions: 341534
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)