Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0252
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    37   0.014
At1g03070.1 68414.m00281 expressed protein low similarity to N-m...    34   0.10 
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    29   3.8  
At2g29620.1 68415.m03598 expressed protein                             29   3.8  
At1g01480.2 68414.m00064 1-aminocyclopropane-1-carboxylate synth...    28   6.6  
At1g01480.1 68414.m00063 1-aminocyclopropane-1-carboxylate synth...    28   6.6  

>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
 Frame = +1

Query: 97  QILLTSVQDRKIIIVYSFLVYFLFASSSYSCHLIACSSPIVQPSP-YFYYRNH*AISLIL 273
           Q+L+T      ++ V+S  V+F   ++ ++ +++   +P++   P Y+Y++ H    L+L
Sbjct: 40  QLLVTIAVAATVVKVHSISVFFTTTTAGFALYILLILTPLIVMCPLYYYHQKHPVNYLLL 99

Query: 274 -----VLRSHVHLSCKL*AFTGGRTSCESARL 354
                 L   V L+C   AFT G+   ES  L
Sbjct: 100 GIFTVALAFAVGLTC---AFTSGKVILESVIL 128


>At1g03070.1 68414.m00281 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +1

Query: 97  QILLTSVQDRKIIIVYSFLVYFLFASSSYSCHLIACSSPIVQPSP-YFYYRNH*AISLIL 273
           Q+L T      ++ V    V+F   S+  +  ++   +P++   P Y+Y++ H    L+L
Sbjct: 49  QLLATIAVASTVVFVRPIAVFFATTSAGLALWIVLIITPLIVMCPLYYYHQKHPVNYLLL 108

Query: 274 -----VLRSHVHLSCKL*AFTGGRTSCESARLGT 360
                 L   V L+C   AFT G+   E+A L T
Sbjct: 109 GIFTVALAFAVGLTC---AFTSGKVILEAAILTT 139


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = +1

Query: 97  QILLTSVQDRKIIIVYSFLVYFLFASSSYSCHLIACSSPIVQPSP-YFYYRNH*AISLI- 270
           Q+L T      ++ V    ++F       + +++   +P++   P Y+Y++ H    L+ 
Sbjct: 49  QLLATVAVAATVVTVRPIALFFATTGLGLALYIVIIITPLIVLCPLYYYHQKHPVNYLLL 108

Query: 271 ----LVLRSHVHLSCKL*AFTGGRTSCESARL 354
               L L   V L+C   AFT G+   ES  L
Sbjct: 109 GIFTLALAFVVGLTC---AFTNGKVILESVIL 137


>At2g29620.1 68415.m03598 expressed protein
          Length = 747

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 82  YRFTKQILLTSVQDRKIIIVYSFLVYFLFASSSYSCHLIACSSPIVQPSPYFYYRNH 252
           +R+ K+  + S     +II+Y+FL +  +         + CSSP++  +  FY RNH
Sbjct: 25  FRYVKRYPIVSGVSTFLIILYTFLPWVFY--------FLLCSSPLIAFAS-FYIRNH 72


>At1g01480.2 68414.m00064 1-aminocyclopropane-1-carboxylate synthase
           2 /  ACC synthase 2  (ACS2) (ACC1) identical to
           1-aminocyclopropane-1-carboxylate synthase SP|Q06402
           [GI:166578] from [Arabidopsis thaliana]
          Length = 390

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -3

Query: 256 LSDFGSKNKAKVVLSGNYTR*DGMSKSSKRIENTPKTNTRLLF 128
           + DF SKNK K+V   +       +KS+K+++ T +TN RL F
Sbjct: 326 IQDFVSKNKNKIVEKASENDQVIQNKSAKKLKWT-QTNLRLSF 367


>At1g01480.1 68414.m00063 1-aminocyclopropane-1-carboxylate synthase
           2 /  ACC synthase 2  (ACS2) (ACC1) identical to
           1-aminocyclopropane-1-carboxylate synthase SP|Q06402
           [GI:166578] from [Arabidopsis thaliana]
          Length = 496

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -3

Query: 256 LSDFGSKNKAKVVLSGNYTR*DGMSKSSKRIENTPKTNTRLLF 128
           + DF SKNK K+V   +       +KS+K+++ T +TN RL F
Sbjct: 432 IQDFVSKNKNKIVEKASENDQVIQNKSAKKLKWT-QTNLRLSF 473


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,109,716
Number of Sequences: 28952
Number of extensions: 321383
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)