Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0251
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   1.9  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   3.4  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   7.8  

>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 199 EFGFHYTENGDKLLHVCKRQII-KMKNRFHY 288
           +FGF   EN  KL  + K+Q+I KM + ++Y
Sbjct: 164 DFGFFDKENHPKLYDLTKKQLISKMDSSYNY 194


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 223 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 134
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
 Frame = -3

Query: 379 TSVCMLLIFKSIIDNSKNGVTQNRIISKGNNNES---GFSFL*FVVYKHVTIYLHFLCNE 209
           T+V +  + + ++  S +G+ +    +KGN  +S   G S     +Y+H +  +   C++
Sbjct: 493 TAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSIT-HAIYQHSSDLVAVACDD 551

Query: 208 NQILILDYPVRSLNRSLS*FHNRL 137
             I I+D   R + R L    NRL
Sbjct: 552 FGIRIVDVQTRKIVRELWGHSNRL 575


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 95  EKYNVYQMSRILIQQLYVISNFKLSIS 15
           E +   +M  +L  +LY ISN  LSI+
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSIT 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,273
Number of Sequences: 5004
Number of extensions: 45377
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)