Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0251
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)                      29   2.7  
SB_15844| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-23)                 28   6.2  
SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)                  27   8.2  

>SB_58821| Best HMM Match : RecR (HMM E-Value=1.6)
          Length = 223

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 84  IIFFLYLFRQRIYEIERTRRL*NYDNDRFSDRTG*SKMRIWFSLHRKW 227
           I + LY+ +QR+ +IE  + + N DND  + +   +K+R +     K+
Sbjct: 20  IKYILYIIKQRLEDIEFQKWISNVDNDNRNKQGQSNKLRTYRKFKSKY 67


>SB_15844| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-23)
          Length = 343

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 229 DKLLHVCKRQIIKMKNR 279
           D LLH+ K+QII+ KNR
Sbjct: 223 DNLLHIRKKQIIRTKNR 239


>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
          Length = 498

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 241 VTIYLHFLCNENQILILDYPVRSLNRSLS 155
           + I+  F+C +NQ  I+DY +R  +++ S
Sbjct: 91  IIIFDDFVCEKNQASIIDYFIRGRHKNFS 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,204
Number of Sequences: 59808
Number of extensions: 301132
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)