Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0251
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical pr...    32   0.25 
AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...    28   5.4  
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...    28   5.4  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical
           protein H25K10.5 protein.
          Length = 516

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
 Frame = -3

Query: 379 TSVCMLLIFKSIIDNSKNGVTQ----NRIISKGNNNE-SGFSFL*FVVYKHVTIYLHFLC 215
           T++C +L+F S  D S+N +        ++S G   E S F+ L F+ YK   +Y  FLC
Sbjct: 77  TNICGILVFNSKTDLSENEIVNLFMPVLVLSGGMRVENSSFTSLGFLSYK--GLYFRFLC 134

Query: 214 NENQILI 194
           + + ++I
Sbjct: 135 DRHGMVI 141


>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 448 QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRII 302
           Q +    S  +P     L +  E ++  + +FK +ID  KN   +N+ I
Sbjct: 201 QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFI 249


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 448 QLFTIFDSTYIPR*PNRLEKHDETSVCMLLIFKSIIDNSKNGVTQNRII 302
           Q +    S  +P     L +  E ++  + +FK +ID  KN   +N+ I
Sbjct: 201 QKYATLSSMVVPGSSKLLTEEGEHALYTVTLFKKVIDEFKNTARENKFI 249


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 281 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 403
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 281 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKSV 403
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
           protein C09F9.2 protein.
          Length = 1642

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 244 VCKRQIIKMKNRFHYCYPWR*CDFGLRHSSSCQ 342
           +CK   ++M N    C P+  CD  + +  +C+
Sbjct: 362 ICKEGFVRMANDEDVCVPFDFCDKTVENEETCE 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,194,828
Number of Sequences: 27780
Number of extensions: 246937
Number of successful extensions: 465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)