Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0250
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   2.0  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.2  

>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -1

Query: 698 TERSQNHHPILAQPTMSKVDRVHASLKISSVHRSGDHFRTPRCYFILNQSVM 543
           T+ S +    L+ PT S +D++   +++  ++ + ++  TPR   +  Q V+
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDGLNNNSNYSATPRTRVVNGQIVL 322


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 716 KIKYPITERSQNHHPILAQPTMSKVDRVHA 627
           + K  +T+ S+NHH I+  P  S   + HA
Sbjct: 141 RYKKNLTKISKNHHSIIRTPKKSYFPKDHA 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,852
Number of Sequences: 5004
Number of extensions: 51204
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)