Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0250
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0087 + 17807088-17807183,17807286-17807444,17808718-178089...    29   4.9  
02_02_0454 + 10436491-10436820,10437487-10437570,10437667-104377...    28   8.5  

>05_04_0087 +
           17807088-17807183,17807286-17807444,17808718-17808969,
           17809514-17809729,17809962-17809993,17810198-17810293,
           17811435-17811544,17811607-17811757,17812099-17812201
          Length = 404

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -1

Query: 707 YPITERSQNHHPILAQPTMSKVDRVHASLKISSVH---RSGDHFRTPRCYFILNQSV 546
           + + + S++H   L++ TMS+   + A LK  +VH   R   +F  P C+  L++ +
Sbjct: 201 FRLPDESESHEISLSELTMSEGATILAILKRGAVHEVFRLQKYFIVPYCFLNLSRDI 257


>02_02_0454 +
           10436491-10436820,10437487-10437570,10437667-10437797,
           10437873-10437948,10438366-10438436,10438559-10438645,
           10438725-10438797,10438881-10438948,10439020-10439088,
           10439160-10439265,10439831-10439887,10440297-10440389
          Length = 414

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 613 EIFSDACTRS--TFDIVGCASMGWWFCERSVIG 705
           E  S  C+RS  T D+ GC  + WW  +  V G
Sbjct: 343 EALSKHCSRSLTTLDVNGCIGIKWWEVDLFVSG 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,392
Number of Sequences: 37544
Number of extensions: 284601
Number of successful extensions: 465
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)