Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0250
         (716 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC140011-1|AAI40012.1|  227|Homo sapiens STOX1 protein protein.        31   5.4  
BC132827-1|AAI32828.1|  949|Homo sapiens CCDC66 protein protein.       30   9.5  
AK095688-1|BAC04607.1|  220|Homo sapiens protein ( Homo sapiens ...    30   9.5  

>BC140011-1|AAI40012.1|  227|Homo sapiens STOX1 protein protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 5.4
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -1

Query: 701 ITERSQNHHPILAQPTMSKVDRVHASL-KISSVHRSGDHFR--TPRCYFILNQSVMSNIR 531
           + ER   HHP +A P+   +     +L K   ++ +G+ +   TP+ YFI N +   N R
Sbjct: 145 LLERLMKHHPGIAIPSEDILYTTLGTLIKERKIYHTGEGYFIVTPQTYFITNTTTQENKR 204

Query: 530 GIQS 519
            + S
Sbjct: 205 MLPS 208


>BC132827-1|AAI32828.1|  949|Homo sapiens CCDC66 protein protein.
          Length = 949

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 711 KVSNNGALTKPPSHTRTAHNVKSRSSTCI 625
           K+ N   + K P  T+T H +KS   TCI
Sbjct: 34  KMGNKAKIAKCPLRTKTGHILKSTQDTCI 62


>AK095688-1|BAC04607.1|  220|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38369 fis, clone FEBRA2001828. ).
          Length = 220

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 711 KVSNNGALTKPPSHTRTAHNVKSRSSTCI 625
           K+ N   + K P  T+T H +KS   TCI
Sbjct: 34  KMGNKAKIAKCPLRTKTGHILKSTQDTCI 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,232,115
Number of Sequences: 237096
Number of extensions: 1631489
Number of successful extensions: 1930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)