Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0250
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   7.7  
AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin...    28   7.7  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    28   7.7  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   7.7  

>Z83114-7|CAJ76943.1|  525|Caenorhabditis elegans Hypothetical
           protein K09B11.5b protein.
          Length = 525

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 708 VSNNGALTKPPSHTRTAHNVKSRSSTCITKNFVSSPQW*SLSNPPL 571
           ++ N     PPSHT  +H VKS  +  +++  VS P    +S PP+
Sbjct: 450 IATNLERPSPPSHTAKSHTVKSPMTPPVSQPPVSQP---PVSQPPV 492


>Z83114-6|CAB63235.1|  589|Caenorhabditis elegans Hypothetical
           protein K09B11.5a protein.
          Length = 589

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 708 VSNNGALTKPPSHTRTAHNVKSRSSTCITKNFVSSPQW*SLSNPPL 571
           ++ N     PPSHT  +H VKS  +  +++  VS P    +S PP+
Sbjct: 514 IATNLERPSPPSHTAKSHTVKSPMTPPVSQPPVSQP---PVSQPPV 556


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 584 RTPRCYFILNQSVMSNIRGIQSTNVNVPVNS 492
           R P    +LN SV S+IR   ++N N P++S
Sbjct: 258 RHPTTSHLLNTSVTSSIRANVNSNSNTPIHS 288


>AF040644-3|AAP82651.1|  336|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform c protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 584 RTPRCYFILNQSVMSNIRGIQSTNVNVPVNS 492
           R P    +LN SV S+IR   ++N N P++S
Sbjct: 258 RHPTTSHLLNTSVTSSIRANVNSNSNTPIHS 288


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 584 RTPRCYFILNQSVMSNIRGIQSTNVNVPVNS 492
           R P    +LN SV S+IR   ++N N P++S
Sbjct: 258 RHPTTSHLLNTSVTSSIRANVNSNSNTPIHS 288


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 584 RTPRCYFILNQSVMSNIRGIQSTNVNVPVNS 492
           R P    +LN SV S+IR   ++N N P++S
Sbjct: 258 RHPTTSHLLNTSVTSSIRANVNSNSNTPIHS 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,771
Number of Sequences: 27780
Number of extensions: 280788
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)