Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0250
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18530.1 68417.m02746 expressed protein contains Pfam profile...    31   1.0  
At5g43290.1 68418.m05291 WRKY family transcription factor contai...    29   2.3  
At1g68290.1 68414.m07801 bifunctional nuclease, putative similar...    28   7.1  
At3g05310.1 68416.m00579 GTP-binding protein-related low similar...    27   9.4  

>At4g18530.1 68417.m02746 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 349

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 698 TERSQNHHPILAQPTMSKVDRVHASLKISSVHRSGDHFRTPRC 570
           T +S+ HHPI A+   SKV R     K     R  DH   P C
Sbjct: 182 TSKSEVHHPITARRKKSKVHR--RMYKYKGSGRCDDHSTNPPC 222


>At5g43290.1 68418.m05291 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 274

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 713 IKYPITERSQNHHPILAQPTMSKVDRVHASLKISSVHRSGDHFR 582
           + +P+ E S++  P+L + T+SKVDR    +K +S     D ++
Sbjct: 75  LTHPVREISKSTVPLLERSTLSKVDRYTLKVKNNSNGMCDDGYK 118


>At1g68290.1 68414.m07801 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 290

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 124 LLFESGSDTFNKLTFSEH*ILFRYYFATSPIHHIMRPLACA 2
           LL ES     + L      + FRY+++ SP+H+I  P AC+
Sbjct: 55  LLPESAEGDLSSLCLWADRVKFRYHWS-SPLHYINTPDACS 94


>At3g05310.1 68416.m00579 GTP-binding protein-related low similarity
           to rac 1 protein [Physcomitrella patens] GI:7243743;
           contains Pfam profile PF00036: EF hand (domain)
          Length = 648

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 566 NNNGGFESDHHCGELTKFL-VMHVLDRLLTLWAVRVWDGGFV 688
           NNN G   +H+   + K   V+   D+ L L  VR+ D GF+
Sbjct: 457 NNNNGSTDEHYAVNMVKEPGVISDTDKTLVLKEVRIKDDGFM 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,390
Number of Sequences: 28952
Number of extensions: 248521
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)