Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0249
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   113   3e-26
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   7.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   9.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  113 bits (271), Expect = 3e-26
 Identities = 51/81 (62%), Positives = 64/81 (79%)
 Frame = +2

Query: 11  LSLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 190
           L+LPVLAG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SH
Sbjct: 204 LTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSH 263

Query: 191 IISQERGKKETFGCLGIIYAI 253
           II      K  FG  G+++A+
Sbjct: 264 II-PSLAHKPIFGKEGMLWAM 283



 Score =  105 bits (253), Expect = 4e-24
 Identities = 50/84 (59%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
 Frame = +1

Query: 256 AIGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN-PN 432
           +I LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   
Sbjct: 285 SIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVP 344

Query: 433 IL*RLGFVFLFTVGGLTGVILANS 504
           +L  +GF+ LFT+GGLTGVIL+NS
Sbjct: 345 MLYAIGFLILFTIGGLTGVILSNS 368



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 510 DITLHDTYYVVAHFHYVLS 566
           DI  HDTY+VVAHFHYVLS
Sbjct: 371 DIAFHDTYFVVAHFHYVLS 389


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 211 KKRNFWLFRNNLCY-TA---IGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 375
           K  NF  +R++  + TA   I L+GF+  + ++ T+G+ I T        I I VP  +
Sbjct: 521 KPTNFSFYRDSFRFITAMFIIALIGFVFSSINLLTLGVPIATIIIRALDLITIVVPPAL 579


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 190 YYFTRKRKKRNFWLFRNNLCYTAIG 264
           YY T   KK +   F  +LCYT  G
Sbjct: 190 YYITALNKKFHIEHFTCSLCYTVFG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,757
Number of Sequences: 5004
Number of extensions: 36228
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)