Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0249
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   93   2e-19
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)                 29   2.6  
SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)                   29   4.5  
SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)                  28   5.9  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/66 (66%), Positives = 56/66 (84%)
 Frame = +1

Query: 310 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 489
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 490 ILANSS 507
           ILANSS
Sbjct: 61  ILANSS 66



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +3

Query: 510 DITLHDTYYVVAHFHYVLS 566
           D+ +HDTYYVVAHFHYVLS
Sbjct: 68  DVVMHDTYYVVAHFHYVLS 86


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 289 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 438
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
          Length = 491

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 LFRNNLCYTAIGLLGFIV*AHHIFTVGIDIDT 324
           +F+N+LCY   G L      H I+  G D+ T
Sbjct: 382 IFQNDLCYHIYGSLSMYADDHQIYHTGSDLST 413


>SB_47464| Best HMM Match : RVT_1 (HMM E-Value=0.012)
          Length = 558

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 LFRNNLCYTAIGLLGFIV*AHHIFTVGIDIDT 324
           +F+N+LCY   G L      H I+  G D+ T
Sbjct: 145 IFQNDLCYHIDGSLSMYADDHQIYHTGSDLST 176


>SB_12628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 LFRNNLCYTAIGLLGFIV*AHHIFTVGIDIDT 324
           +F+N+LCY   G L      H I+  G D+ T
Sbjct: 496 IFQNDLCYHIDGNLSMYADDHQIYHTGSDLST 527


>SB_6740| Best HMM Match : RVT_1 (HMM E-Value=4.5e-22)
          Length = 884

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 LFRNNLCYTAIGLLGFIV*AHHIFTVGIDIDT 324
           +F+N+LCY   G L      H I+  G D+ T
Sbjct: 356 IFQNDLCYHIDGNLSMYADDHQIYHTGSDLST 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,501
Number of Sequences: 59808
Number of extensions: 231335
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)