Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0249
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    29   2.2  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    29   2.2  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +1

Query: 106 NFISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLF----RNNLCYTAIGLLG 273
           N++ T+I+I WT   + +++   +YN S+ F +       W+F    RN  C   + LL 
Sbjct: 111 NYVLTYIIINWTLPPVIYSYFFFFYNCSFPFFQFG-----WVFMEAQRNETCGAKLLLLS 165

Query: 274 FIV*AHHIFTVGI-DIDT 324
             V    IF + I DI T
Sbjct: 166 LSVQFVIIFIITILDIST 183


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 56  DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 193
           + N ++ F DP  G DP LY++    F +  V I  +  +G IS++
Sbjct: 187 NENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAICTIVFYGYISYV 232


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 152 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 57
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 152 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 57
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical
           protein F30B5.6 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 220 NFWLFRNNLCYTAIGLLGFIV*AHHIFTVGIDIDTRA--YFTSATIIIAVPTGIKIF 384
           +FW+FR  L Y  I +L  ++ A  +F        R    F+ AT I  + + + IF
Sbjct: 170 DFWMFREKLVYICISMLSAVL-AIRLFVWKFCTKNRTDHMFSKATQIALLDSAVVIF 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,320
Number of Sequences: 27780
Number of extensions: 203729
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)