Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0247
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    41   0.025
UniRef50_Q4A5Y0 Cluster: Putative uncharacterized protein; n=2; ...    37   0.40 
UniRef50_Q0G6G5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.0  
UniRef50_Q22R31 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 41.1 bits (92), Expect = 0.025
 Identities = 24/48 (50%), Positives = 27/48 (56%)
 Frame = -3

Query: 678 FQRGSSHTDFLPD*EEESHTPGLLSLDTPYPGPRKVKYLGVTLDASMT 535
           FQRG+S           + TP +     P P  RKVKYLGVTLDASMT
Sbjct: 730 FQRGNSPL-ISSRIRRRNITPPITLFGLPIPWARKVKYLGVTLDASMT 776


>UniRef50_Q4A5Y0 Cluster: Putative uncharacterized protein; n=2;
           Mycoplasma synoviae 53|Rep: Putative uncharacterized
           protein - Mycoplasma synoviae (strain 53)
          Length = 291

 Score = 37.1 bits (82), Expect = 0.40
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -1

Query: 317 NVTHFTNL-FVVSLI*KSRSPVIHNEKCVQTRKTRAQIKDVADSEIKSYNKTFK 159
           N++ F ++ F  +L+  S S +  N+   +T +  A +K + DS++K YN TFK
Sbjct: 29  NISSFFSVSFPDNLVPNSFSALKENQSVAETAQVNATLKSIKDSDLKLYNDTFK 82


>UniRef50_Q0G6G5 Cluster: Putative uncharacterized protein; n=1;
           Fulvimarina pelagi HTCC2506|Rep: Putative
           uncharacterized protein - Fulvimarina pelagi HTCC2506
          Length = 206

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = -1

Query: 509 IFVQILREYLGK--SIVIVSRVSKFAFRSSVKYLEWMYTN 396
           ++  ++RE++GK  + +++ RV  FAF  SVK L W++TN
Sbjct: 117 VYFGVVREHIGKGAAALMMERVVTFAFERSVKRL-WLHTN 155


>UniRef50_Q22R31 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2064

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 418  YLTDDLKANLLTRDTITIDFPKYSLKI*TNIA-MNANAYWCHRCIQGNAQVLD 573
            Y+   ++ N +T+  I +     + KI   I  +N N Y C++C++G  Q+ D
Sbjct: 1483 YINSTIQTNSITKKPILLSIEFRNCKIGEIIQQINTNIYQCNQCLEGTYQIKD 1535


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,500,742
Number of Sequences: 1657284
Number of extensions: 12806378
Number of successful extensions: 27513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27506
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)