Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0247
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    29   0.84 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.6  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 606 SLDTPYPGPRKVKYLGVTLDASMTPICVSIHS-NICSNFKR 487
           +L  P PGP   +YL V+   ++T + +  +  N C+NF R
Sbjct: 272 ALRCPMPGPNSFEYLLVSAFLTLTQLNLPAYDLNFCNNFIR 312


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 225 PCLNAFFVMNHWAS*--LLDQRHYK*VCEMCNIDSSRIISTRNTLNDNLKIAIELLASVI 398
           P L+ F +   W     + D    K   E   I+    I   N ++  LK   +LL   +
Sbjct: 271 PLLDRFLIQQDWKDPRWIRDTSVVKEGLERDAINDRLCIFGENLIDLELKSVSQLLIDEV 330

Query: 399 RIHPFQILNRRSKSKFTDARYYYY 470
            +HPF I    S   ++   YYYY
Sbjct: 331 -LHPFYIFQVFSIILWSMDSYYYY 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,558
Number of Sequences: 5004
Number of extensions: 56349
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)