Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0247
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_28102| Best HMM Match : YTH (HMM E-Value=0)                         28   8.2  

>SB_27952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 269 SRSPVIHNEKCVQTRKTRAQIKDVADSEIKSYNKTFK--FIRLH 144
           +R PV+H    +Q       +K   DS I+SY    +  F R+H
Sbjct: 46  ARGPVLHKNSTIQRAVPGVTVKADLDSRIQSYATCLRHVFFRIH 89


>SB_28102| Best HMM Match : YTH (HMM E-Value=0)
          Length = 325

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 479 GKSIVIVSRVSKFAFRSSVKYLEWMYTNHGS*KFNSYF 366
           G    I+   S+     S+KY  W  T HG+ + N  F
Sbjct: 159 GARFFIIKSYSEDDIHRSIKYCVWTSTEHGNRRLNEAF 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,562,466
Number of Sequences: 59808
Number of extensions: 412272
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)