Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0247
         (689 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           25   1.7  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   1.7  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   5.2  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   5.2  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   6.9  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 579 RKVKYLGVTLDASMTPICVSIHSNICSNFKRIFGEIN 469
           R V+Y   TL A +TPIC+ I  +      R+F  +N
Sbjct: 890 RTVRYETATLLAGLTPICLLIEED-----ARVFERVN 921


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 579 RKVKYLGVTLDASMTPICVSIHSNICSNFKR 487
           R + Y  V + ASM P+C+++  +   NF++
Sbjct: 859 RTISYEAVCVIASMMPLCITLEED-SKNFRK 888


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 579 RKVKYLGVTLDASMTPICVSI-HSNICSNFKRIFGEINSNSISRQ 448
           + + ++ V + ASM PIC+ +   + C +F  +     S S ++Q
Sbjct: 798 KTISHVAVCVIASMVPICLILAEDSECCSFSGVSNAGLSRSSAKQ 842


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 579 RKVKYLGVTLDASMTPICV 523
           R V+Y   TL A +TPIC+
Sbjct: 823 RTVRYETATLLAGLTPICL 841


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 312  YTFHKPICSVFDLKVKKPSDS*RKMRSNTENTCSN 208
            +TFHK I  + + K KK  D+ R+ +S     C+N
Sbjct: 2309 HTFHKEIKGIDEAKSKKIWDALRE-KSFLTTDCTN 2342


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,824
Number of Sequences: 2352
Number of extensions: 13792
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)