Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0247
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 168 NLQIYKAAYLIYKFNRSVHFRRCVSSGG 85
           NLQ+Y    L +K+  +     C+S+GG
Sbjct: 113 NLQLYLGGDLDWKYYTTNESHACLSTGG 140


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 522 SIHSNICSN 496
           SIH NICSN
Sbjct: 368 SIHDNICSN 376


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 612 LLSLDTPYPGPRKVKYLGVTLDASMTPICVSIHSNICSNFKRIFG 478
           LLS+   +   +  + LG +LD     I +S H N+   +  I G
Sbjct: 237 LLSVLPEHVAVKMRQDLGASLDTQFKKIYMSRHENVSILYADIVG 281


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 112 FSPLCFKWGWK 80
           F+ LC K GWK
Sbjct: 212 FTELCMKLGWK 222


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 31   DTHAVVTRARRQRNVNASTPT*NTAAKM 114
            DT+AVVT+++  R+   +T   N  A++
Sbjct: 1001 DTNAVVTQSKEARDNITATKQLNNKARI 1028


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,207
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)