Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0246
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    45   0.002
UniRef50_Q8T107 Cluster: Putative uncharacterized protein Bmhig;...    35   2.2  
UniRef50_Q7EYD8 Cluster: Putative uncharacterized protein P0665F...    34   2.9  
UniRef50_A7NZY2 Cluster: Chromosome chr6 scaffold_3, whole genom...    34   3.8  
UniRef50_Q12Q89 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_Q9G801 Cluster: NADH dehydrogenase subunit 6; n=2; Tria...    33   6.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +2

Query: 605 VLSVYWEPIYIYDVNAPPTLRYKF 676
           VLS YW P ++YDVNAPPT RYKF
Sbjct: 168 VLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_Q8T107 Cluster: Putative uncharacterized protein Bmhig;
           n=1; Bombyx mori|Rep: Putative uncharacterized protein
           Bmhig - Bombyx mori (Silk moth)
          Length = 786

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 22/36 (61%), Positives = 22/36 (61%)
 Frame = +3

Query: 99  NREHLLSTYFIRKIGTRLRDSNTGASLNTNAPDVLS 206
           NR  LLSTYFIR           GASLNTNAPD LS
Sbjct: 386 NRGRLLSTYFIRN----------GASLNTNAPDDLS 411


>UniRef50_Q7EYD8 Cluster: Putative uncharacterized protein
           P0665F09.120-1; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0665F09.120-1 - Oryza sativa subsp. japonica (Rice)
          Length = 496

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -3

Query: 269 KRVILRLTIKTVTKM*SSWPNG*DVGCIRVERCTGVRIPQAGTNFSNEIRTQQMFTIDFH 90
           K ++LR+  ++V  + S+ P+G  +    + RCTGV I   G N   +I T      DFH
Sbjct: 179 KAMVLRVA-RSVVSVSSTMPDGGGL----ISRCTGVVIGWDGANKRAKILTAASVVCDFH 233

Query: 89  GE 84
           GE
Sbjct: 234 GE 235


>UniRef50_A7NZY2 Cluster: Chromosome chr6 scaffold_3, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr6 scaffold_3, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 518

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 121 RISLEKLVPACGIRTPVHRSTRMHPTSYPLGHDDYIF 231
           ++++  L+PACG+   +HR   +H   Y +G D  +F
Sbjct: 249 QVTVTGLLPACGLMGSIHRGKELHGLIYRMGFDMNVF 285


>UniRef50_Q12Q89 Cluster: Putative uncharacterized protein; n=1;
           Shewanella denitrificans OS217|Rep: Putative
           uncharacterized protein - Shewanella denitrificans
           (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 479

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 21/89 (23%), Positives = 44/89 (49%)
 Frame = +3

Query: 36  ANYNFAGFIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGASLNTNAPDVLSVRP 215
           +N+ F   + +   Y +T+E N+ ++L +  +  + T L+ +NT  +L T   + LS   
Sbjct: 51  SNWVFIASLLLMVSYHWTIEQNKTNILMSGIVLDLNTNLKVNNTIRTLYTR--NELSQWL 108

Query: 216 RRLHFCYSFDGQTKNDSLSIKKSLKTKEH 302
           + +H+ Y+ D    + S+ I+       H
Sbjct: 109 KNVHWHYAGDKLPNHFSIRIEDDATRNFH 137


>UniRef50_Q9G801 Cluster: NADH dehydrogenase subunit 6; n=2;
           Triatoma|Rep: NADH dehydrogenase subunit 6 - Triatoma
           dimidiata (Kissing bug)
          Length = 167

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +2

Query: 317 MTVLFLYLQSKVNKEKLRCLTTSVYHLLDLTVIRYVIIWSLIRNRSSLKTLKLCFTNRLH 496
           M VLF+Y+ S  + EK     + + ++L LT I  VI + L+     L+T  +C T + H
Sbjct: 61  MLVLFIYMASVASNEKFHTTWSMILYILPLT-ISSVIFFFLV---EQLETKSMCSTMKKH 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,432,170
Number of Sequences: 1657284
Number of extensions: 11212698
Number of successful extensions: 23260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23255
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)