Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0246
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   9.5  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    21   9.5  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   9.5  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   9.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 344 SKVNKEKLRCLTTSVYHLLDLT 409
           S+V+K+   C     YH LD+T
Sbjct: 295 SQVHKQTAICFKAPRYHTLDIT 316


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +3

Query: 27  SNYANYNFAGFIFITRCYSFTVEVNREHLLSTYFIRKIGTRLR-DSNTGASLNTNAPDVL 203
           S+Y N + A F F+ R     + +   HL     I K  ++ R    T    + N P +L
Sbjct: 413 SDYQNKSLAAFDFVARNSDTPIILWTSHLTQADVIEKYLSKARYVIQTWVPASDNLPTLL 472


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 292 PKNTLL*KDDCLISLSSIKSKQRKVKMSD 378
           PKN     DD L+S S  + K  + K  D
Sbjct: 152 PKNKTDDDDDALVSDSDDREKDEEDKRDD 180


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 644 RRRCIWVPSKHL 609
           R   +WVP KHL
Sbjct: 129 RSLAVWVPYKHL 140


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 644 RRRCIWVPSKHL 609
           R   +WVP KHL
Sbjct: 129 RSLAVWVPYKHL 140


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 365 LRCLTTSVYHLLDLTVIRYVIIWSL 439
           +RCL +     + LTV RY   W L
Sbjct: 255 IRCLKSRPARQIALTVPRYQAWWYL 279


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,999
Number of Sequences: 336
Number of extensions: 3072
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)