Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0246
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   3.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   7.8  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   7.8  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 326 LFLYLQSKVNKEKLRCLTTSVYHLLDLTVIRYVIIWSLIRNRSSLKTLKLCFTNR 490
           L LY QS V          +  HLL +  +  + +W +++ RS + ++ L FT R
Sbjct: 290 LILYTQSDVKNLHFGKNKHTKPHLLVMDALSNLYVWKILQKRSEI-SVSLLFTIR 343


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +2

Query: 308 FERMTVLFLYLQSKVNKEKLRCLTTSVYHLLDLTVIRYVIIWSLIRNRSSLKTLKLCFTN 487
           F  M+ + LY  ++      RC T  +    +L  +R V+  S+      L TLKL   N
Sbjct: 16  FFLMSSIVLYFNNEFLMFADRC-TKDIIPSEELRYLRQVLNDSIPSKDEPLPTLKLDSLN 74

Query: 488 RLHGILVVPEIQSQ 529
            + G  V+P+I  Q
Sbjct: 75  DISGEPVIPKIIHQ 88


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 31  ITQIIILRVSFLLHDVIPSPWKSIVNI 111
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 446 NRSSLKTLKLCFTNRLHG 499
           ++SS+KTLKLC   R+ G
Sbjct: 254 SKSSIKTLKLCLYRRIIG 271


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 99  NREHLLSTYFI-RKIGTRLRDSNTGASLNTNAPDVLSVRPRRLH 227
           +R H + T  + RK+ + + D     ++N N+ D+L  R  +LH
Sbjct: 283 SRSHSIFTITLHRKVSSGMTDETNSLTINNNSDDLL--RASKLH 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,823
Number of Sequences: 5004
Number of extensions: 50864
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)