Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0246
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 30   1.5  
SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 29   2.7  
SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_24522| Best HMM Match : DS (HMM E-Value=0)                          28   8.2  

>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 313  FKAKCSLVFSDFLILSESFFV*--PSKL*QKCSRRGLTDKTSGAFVLSDAPVFESRRRVP 140
            F   CS+ +  F + S + F+   P+ L +      L      A + +D+P   +R +V 
Sbjct: 3574 FTTLCSVAYVRFFLASLAEFIRKHPNSLTENADEYSLLIDDINAAMTADSPTETTRMQVG 3633

Query: 139  IFLMKYVLNK 110
            IFL+K V  K
Sbjct: 3634 IFLLKQVHEK 3643


>SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 519

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 289 RPKNTLL*KDDCLISLSSIKSKQRKVKMSDYFC 387
           +P N LL  DD ++  +S K  QRK+ + D FC
Sbjct: 363 KPLNCLLYADDLVLFSTSEKGLQRKLDILDSFC 395


>SB_54348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 255 KNDSLSIKKSLKTKEHFALK 314
           K+DS SIK+ ++TKEH  LK
Sbjct: 345 KSDSASIKEIIRTKEHQELK 364


>SB_24522| Best HMM Match : DS (HMM E-Value=0)
          Length = 340

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 629 WVPSKHLTQVGREIVHP 579
           W PSK + ++G+EI HP
Sbjct: 201 WTPSKFIARLGKEINHP 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,901,877
Number of Sequences: 59808
Number of extensions: 371779
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)