Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0245
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CD2B4 Cluster: cyclic nucleotide-binding domain...    33   6.7  

>UniRef50_UPI00006CD2B4 Cluster: cyclic nucleotide-binding domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: cyclic nucleotide-binding domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1857

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 430 AHSNGTDNHDRSDKSEDYNTKQTKKKILNIIYVPKIQK*PKPLRRPKGS-KSINNKYIVN 254
           ++    +N D S  SED + K  ++KI  I +  K+    K L   K S KSINN+Y +N
Sbjct: 182 SNEESIENDDDSSSSEDDSIKIIEEKIDQIQFNLKMSS--KNLNTTKNSEKSINNRYQMN 239

Query: 253 S 251
           S
Sbjct: 240 S 240


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,312,314
Number of Sequences: 1657284
Number of extensions: 12869146
Number of successful extensions: 25549
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25542
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)