Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0245
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    29   4.7  
08_02_1197 + 25199614-25199795,25200241-25200308,25200309-252004...    28   8.1  

>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 504 IIYMSVPDLPPNGR--SGDSS*GA*HLPTAMVLTTTIALIRVKITILSK 364
           ++Y SVP LPP+    S  SS G+  +   +++  T A++ V I ++ +
Sbjct: 192 VVYPSVPSLPPSATPPSSSSSIGS-SIAIVVLVVITTAIVTVAIVVIRR 239


>08_02_1197 +
           25199614-25199795,25200241-25200308,25200309-25200400,
           25200940-25201019,25201418-25201535,25202371-25202562
          Length = 243

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 72  SILTWVQF*CFHLLNLFSAVINVIGLSNKHVYRAVI 179
           SIL+W QF    LL + +  IN +    KH Y  ++
Sbjct: 57  SILSWFQFFLASLLYMSAFEINKVSCPGKHYYEDLV 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,661
Number of Sequences: 37544
Number of extensions: 346082
Number of successful extensions: 583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)